ArticlePloS one2013
Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Visualization and simulation of full-scale point-neuron circuits via the Neural Circuit Visualizer web platform.Scientific reports · 2026Article
- A computational model of dopaminergic modulation of hippocampal Schaffer collateral-CA1 long-term plasticity.Journal of computational neuroscience · 2022Article
- Comparison of rule- and ordinary differential equation-based dynamic model of DARPP-32 signalling network.PeerJ · 2022Article
- SBML Level 3: an extensible format for the exchange and reuse of biological models.Molecular systems biology · 2020Review
- Effects of location and extent of spine clustering on synaptic integration in striatal medium spiny neurons-a computational study.Medical & biological engineering & computing · 2018Article
- Reproducibility in Computational Neuroscience Models and Simulations.IEEE transactions on bio-medical engineering · 2016Article
- Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations.Frontiers in computational neuroscience · 2016Article
- Quantitative and logic modelling of molecular and gene networks.Nature reviews. Genetics · 2015Review
- Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations.Frontiers in computational neuroscience · 2015Article
- COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.BMC bioinformatics · 2014Article
- Modeling intracellular signaling underlying striatal function in health and disease.Progress in molecular biology and translational science · 2014Review
- Revealing neuronal function through microelectrode array recordings.Frontiers in neuroscience · 2014Review
- Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections.Frontiers in neuroanatomy · 2014Article
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2 authors.
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Abstract
Neuron behavior results from the interplay between networks of biochemical processes and electrical signaling. Synaptic plasticity is one of the neuronal properties emerging from such an interaction. One of the current approaches to study plasticity is to model either its electrical aspects or its biochemical components. Among the chief reasons are the different time scales involved, electrical events happening in milliseconds while biochemical cascades respond in minutes or hours. In order to create multiscale models taking in consideration both aspects simultaneously, one needs to synchronize the two models, and exchange relevant variable values. We present a new event-driven algorithm to synchronize different neuronal models, which decreases computational time and avoids superfluous synchronizations. The algorithm is implemented in the TimeScales framework. We demonstrate its use by simulating a new multiscale model of the Medium Spiny Neuron of the Neostriatum. The model comprises over a thousand dendritic spines, where the electrical model interacts with the respective instances of a biochemical model. Our results show that a multiscale model is able to exhibit changes of synaptic plasticity as a result of the interaction between electrical and biochemical signaling. Our synchronization strategy is general enough to be used in simulations of other models with similar synchronization issues, such as networks of neurons. Moreover, the integration between the electrical and the biochemical models opens up the possibility to investigate multiscale process, like synaptic plasticity, in a more global manner, while taking into account a more realistic description of the underlying mechanisms.
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