Evidence map›Paper›PMID 23842518›Full record

ArticleClinical and translational medicine2013

Gas signatures from Escherichia coli and Escherichia coli-inoculated human whole blood.

Brandon J Umber, Hye-Won Shin, Simone Meinardi, Szu-Yun Leu, Frank Zaldivar, Dan M Cooper, Donald R Blake

Abstract read
In one paragraph

Article in Clinical and translational medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Profiling of Volatile Metabolites ofInternational journal of molecular sciences · 2025
    Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Volatilomes of Bacterial Infections in Humans.Frontiers in neuroscience · 2020
    Review
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Brandon J UmberDepartment of Chemistry, University of California, Irvine, CA 92697, USA.
Hye-Won ShinDepartment of Pediatrics, University of California, Irvine, CA 92697, USA ; Institute for Clinical and Translational Sciences, University of California, Irvine, CA 92697, USA.
Simone MeinardiDepartment of Chemistry, University of California, Irvine, CA 92697, USA.
Szu-Yun LeuDepartment of Pediatrics, University of California, Irvine, CA 92697, USA ; Institute for Clinical and Translational Sciences, University of California, Irvine, CA 92697, USA.
Frank ZaldivarDepartment of Pediatrics, University of California, Irvine, CA 92697, USA ; Institute for Clinical and Translational Sciences, University of California, Irvine, CA 92697, USA.
Dan M CooperDepartment of Pediatrics, University of California, Irvine, CA 92697, USA ; Institute for Clinical and Translational Sciences, University of California, Irvine, CA 92697, USA.
Donald R BlakeDepartment of Chemistry, University of California, Irvine, CA 92697, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe gaseous headspace above naïve Escherichia Coli (E. coli) cultures and whole human blood inoculated with E. coli were collected and analyzed for the presence of trace gases that may have the potential to be used as novel, non-invasive markers of infectious disease.

methodsThe naïve E. coli culture, LB broth, and human whole blood or E. coli inoculated whole blood were incubated in hermetically sealable glass bioreactors at 37°C for 24 hrs. LB broth and whole human blood were used as controls for background volatile organic compounds (VOCs). The headspace gases were collected after incubation and analyzed using a gas chromatographic system with multiple column/detector combinations.

resultsSix VOCs were observed to be produced by E. coli-infected whole blood while there existed nearly zero to relatively negligible amounts of these gases in the whole blood alone, LB broth, or E. coli-inoculated LB broth. These VOCs included dimethyl sulfide (DMS), carbon disulfide (CS2), ethanol, acetaldehyde, methyl butanoate, and an unidentified gas S. In contrast, there were several VOCs significantly elevated in the headspace above the E. coli in LB broth, but not present in the E. coli/blood mixture. These VOCs included dimethyl disulfide (DMDS), dimethyl trisulfide (DMTS), methyl propanoate, 1-propanol, methylcyclohexane, and unidentified gases R2 and Q.

conclusionsThis study demonstrates 1) that cultivated E. coli in LB broth produce distinct gas profiles, 2) for the first time, the ability to modify E. coli-specific gas profiles by the addition of whole human blood, and 3) that E. coli-human whole blood interactions present different gas emission profiles that have the potential to be used as non-invasive volatile biomarkers of E. coli infection.

Indexed as

AcetaldehydeCarbon disulfide (CS2)Cell cultureDimethyl sulfide (DMS)Escherichia coliEthanolGas biomarkerHuman whole blood cultureMethyl butanoateVolatile organic compounds (VOCs)

Identifiers

PMID23842518
PMCPMC3716923

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.