Evidence map›Paper›PMID 23841812›Full record

ArticleThe journal of physical chemistry. B2013

Measuring competitive fitness in dynamic environments.

Ivan A Razinkov, Bridget L Baumgartner, Matthew R Bennett, Lev S Tsimring, Jeff Hasty

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ivan A RazinkovDepartment of Bioengineering, University of California San Diego , La Jolla, California 92093, United States.
Bridget L Baumgartner
Matthew R Bennett
Lev S Tsimring
Jeff Hasty

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
CARDIOVASCULAR SURGERY/BIOENGINEERING TRAININGT32HL007089 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU · 1985 to 2009
$9.3M
Experimental and mathematical analysis of delay in transcripitional signalingR01GM104974 · NIGMS · RICE UNIVERSITY · PI BENNETT, MATTHEW R. · 2012 to 2016
$1.4M
NHLBI NIH HHS T32 HL007089NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM104974NIGMS NIH HHS R01GM104974
6 · The paper itself

Abstract

Most yeast genes are dispensable for optimal growth in laboratory cultures. However, this apparent lack of fitness contribution is difficult to reconcile with the theory of natural selection. Here we use stochastic modeling to show that environmental fluctuations can select for a genetic mechanism that does not affect growth in static laboratory environments. We then present a novel experimental platform for measuring the fitness levels of specific genotypes in fluctuating environments. We test this platform by monitoring a mixed culture of two yeast strains that differ in their ability to respond to changes in carbon source yet exhibit the same fitness level in static conditions. When the sugar in the growth medium was switched between galactose and glucose, the wild-type strain gained a growth advantage over the mutant strain. Interestingly, both our computational and experimental results show that the strength of the adaptive advantage conveyed by the wild-type genotype depends on the total number of carbon source switches, not on the frequency of these fluctuations. Our results illustrate the selective power of environmental fluctuations on seemingly slight phenotypic differences in cellular response dynamics and underscore the importance of dynamic processes in the evolution of species.

Indexed as

CarbonGalactokinaseGalactoseGenotypeGlucoseMicrofluidic Analytical TechniquesModels, MolecularMutationRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCarbonGAL1 protein, S cerevisiaeGalactokinaseGalactoseGlucoseRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID23841812
PMCPMC3808460

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.