Evidence map›Paper›PMID 23841646›Full record

ArticleThe journal of physical chemistry. B2013

Structure and dynamics of urea/water mixtures investigated by vibrational spectroscopy and molecular dynamics simulation.

J K Carr, L E Buchanan, J R Schmidt, M T Zanni, J L Skinner

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Water-Induced Restructuring of the Surface of a Deep Eutectic Solvent.The journal of physical chemistry letters · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Proteins in binary solvents.Biophysical reviews · 2016
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

J K CarrTheoretical Chemistry Institute and Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States.
L E Buchanan
J R Schmidt
M T Zanni
J L Skinner

Funding

Structural mechanism of diabetic amyloid formationR01DK079895 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Martin T Zanni · 2008 to 2026
$7.7M
Mechanism of membrane-catalyzed amyloid formation in diabetesR01DK088184 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI DE PABLO, JUAN J, SKINNER, JAMES L · 2010 to 2011
$708k
NIDDK NIH HHS DK088184NIDDK NIH HHS DK79895NIDDK NIH HHS R01 DK079895NIDDK NIH HHS R01 DK088184
6 · The paper itself

Abstract

Urea/water is an archetypical "biological" mixture and is especially well-known for its relevance to protein thermodynamics as urea acts as a protein denaturant at high concentration. This behavior has given rise to an extended debate concerning urea's influence on water structure. On the basis of a variety of methods and of definitions of the water structure, urea has been variously described as a structure-breaker, a structure-maker, or as remarkably neutral toward water. Because of its sensitivity to microscopic structure and dynamics, vibrational spectroscopy can help resolve these debates. We report experimental and theoretical spectroscopic results for the OD stretch of HOD/H2O/urea mixtures (linear IR, 2DIR, and pump-probe anisotropy decay) and for the CO stretch of urea-D4/D2O mixtures (linear IR only). Theoretical results are obtained using existing approaches for water and a modification of a frequency map developed for acetamide. All absorption spectra are remarkably insensitive to urea concentration, consistent with the idea that urea only very weakly perturbs the water structure. Both this work and experiments by Rezus and Bakker, however, show that water's rotational dynamics are slowed down by urea. Analysis of the simulations casts doubt on the suggestion that urea immobilizes particular doubly hydrogen bonded water molecules.

Indexed as

Molecular Dynamics SimulationSpectrophotometry, InfraredDeuteriumProtein DenaturationProteinsThermodynamicsUreaWaterDeuteriumProteinsUreaWater

Identifiers

PMID23841646
PMCPMC3808478

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.