Evidence map›Paper›PMID 23840931›Full record

ArticleeLife2013

Fluorescent sensors reporting the activity of ammonium transceptors in live cells.

Roberto De Michele, Cindy Ast, Dominique Loqué, Cheng-Hsun Ho, Susana LA Andrade, Viviane Lanquar, Guido Grossmann, Sören Gehne, Michael U Kumke, Wolf B Frommer

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in eLife, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
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  9. Development and quantitative analysis of a biosensor based on the Arabidopsis SWEET1 sugar transporter.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
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  15. Functional Characterization of theFrontiers in plant science · 2020
    Article
  16. Article
  17. Review
  18. In vivo biosensors: mechanisms, development, and applications.Journal of industrial microbiology & biotechnology · 2018
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Roberto De MicheleDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Cindy AstDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Dominique LoquéFeedstocks Division, Joint BioEnergy Institute, Emeryville, United States.
Cheng-Hsun HoDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Susana LA AndradeDepartment of Biochemistry, Institute for Organic Chemistry and Biochemistry, and BIOSS Center for Biological Signalling Studies, University of Freiburg, Freiburg, Germany.
Viviane LanquarDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Guido GrossmannDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Sören GehneDepartment of Physical Chemistry, Institute of Chemistry, University of Potsdam, Potsdam, Germany.
Michael U KumkeDepartment of Physical Chemistry, Institute of Chemistry, University of Potsdam, Potsdam, Germany.
Wolf B FrommerDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Department of Plant Biology · USCarnegie Institution for Science · USUniversity of Potsdam · DEJoint BioEnergy Institute · USNational Research Council · ITUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ammonium serves as key nitrogen source and metabolic intermediate, yet excess causes toxicity. Ammonium uptake is mediated by ammonium transporters, whose regulation is poorly understood. While transport can easily be characterized in heterologous systems, measuring transporter activity in vivo remains challenging. Here we developed a simple assay for monitoring activity in vivo by inserting circularly-permutated GFP into conformation-sensitive positions of two plant and one yeast ammonium transceptors ('AmTrac' and 'MepTrac'). Addition of ammonium to yeast cells expressing the sensors triggered concentration-dependent fluorescence intensity (FI) changes that strictly correlated with the activity of the transporter. Fluorescence-based activity sensors present a novel technology for monitoring the interaction of the transporters with their substrates, the activity of transporters and their regulation in vivo, which is particularly valuable in the context of analytes for which no radiotracers exist, as well as for cell-specific and subcellular transport processes that are otherwise difficult to track. DOI:http://dx.doi.org/10.7554/eLife.00800.001.

Indexed as

Biosensing TechniquesAmino Acid SequenceAmmonium CompoundsBase SequenceDNAFluorescent DyesGreen Fluorescent ProteinsKineticsMolecular Sequence DataReceptors, Cell SurfaceAmmonium CompoundsDNAFluorescent DyesGreen Fluorescent ProteinsReceptors, Cell SurfaceammoniumArabidopsisbiosensorconformationfluorescent probesGFPtransport

Identifiers

PMID23840931
PMCPMC3699834
OpenAlexW2068275691

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.