Evidence map›Paper›PMID 23840930›Full record

ArticleeLife2013

Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerization.

Andrea Sánchez-Vallet, Raspudin Saleem-Batcha, Anja Kombrink, Guido Hansen, Dirk-Jan Valkenburg, Bart P H J Thomma, Jeroen R Mesters

Open access · goldAbstract read
In one paragraph

Article in eLife, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed, 1 pooled it
35.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 1 synthesis or guideline pooled it, 263 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  7. Review
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  14. Article
  15. A Virulence Factor fromPlants (Basel, Switzerland) · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Plant lysin motif extracellular proteins are required for arbuscular mycorrhizal symbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Silencing a Chitinase Gene,International journal of molecular sciences · 2023
    Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Andrea Sánchez-ValletCentro de Biotecnología y Genómica de Plantas , Universidad Politécnica de Madrid , Madrid , Spain ; Laboratory of Phytopathology , Wageningen University , Wageningen , Netherlands.
Raspudin Saleem-Batcha
Anja Kombrink
Guido Hansen
Dirk-Jan Valkenburg
Bart P H J Thomma
Jeroen R Mesters
University of Lübeck · DEWageningen University & Research · NLUniversidad Politécnica de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While host immune receptors detect pathogen-associated molecular patterns to activate immunity, pathogens attempt to deregulate host immunity through secreted effectors. Fungi employ LysM effectors to prevent recognition of cell wall-derived chitin by host immune receptors, although the mechanism to compete for chitin binding remained unclear. Structural analysis of the LysM effector Ecp6 of the fungal tomato pathogen Cladosporium fulvum reveals a novel mechanism for chitin binding, mediated by intrachain LysM dimerization, leading to a chitin-binding groove that is deeply buried in the effector protein. This composite binding site involves two of the three LysMs of Ecp6 and mediates chitin binding with ultra-high (pM) affinity. Intriguingly, the remaining singular LysM domain of Ecp6 binds chitin with low micromolar affinity but can nevertheless still perturb chitin-triggered immunity. Conceivably, the perturbation by this LysM domain is not established through chitin sequestration but possibly through interference with the host immune receptor complex. DOI:http://dx.doi.org/10.7554/eLife.00790.001.

Indexed as

Amino Acid SequenceChitinCladosporiumDimerizationFungal ProteinsModels, MolecularMolecular Sequence DataProtein BindingProtein ConformationReceptors, ImmunologicSequence Homology, Amino AcidChitinFungal ProteinsReceptors, ImmunologicCladosporiumeffectorimmunityOtherreceptortomato

Identifiers

PMID23840930
PMCPMC3700227
OpenAlexW2111080261

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.