Evidence map›Paper›PMID 23840891›Full record

ArticlePloS one2013

Characterization of the Pichia pastoris protein-O-mannosyltransferase gene family.

Juergen H Nett, W James Cook, Ming-Tang Chen, Robert C Davidson, Piotr Bobrowicz, Warren Kett, Elena Brevnova, Thomas I Potgieter, Mark T Mellon, Bianka Prinz and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 44 citations in OpenAlex.

  1. Metabolic engineering ofApplied and environmental microbiology · 2026
    Review
  2. Comparison of CRISPR-MAD7 and CRISPR-Cas9 for Gene Disruptions inJournal of fungi (Basel, Switzerland) · 2024
    Article
  3. Microorganisms · 2024
    Review
  4. A Cost-EffectiveBioengineering (Basel, Switzerland) · 2024
    Article
  5. Considerations for Glycoprotein Production.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Engineering of Yeast Glycoprotein Expression.Advances in biochemical engineering/biotechnology · 2021
    Article
  11. Review
  12. Article
  13. EngineeringRSC advances · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Juergen H NettBiologics Discovery-GlycoFi Inc., Merck Research Laboratories, Lebanon, New Hampshire, United States of America. juergen_nett@merck.com
W James Cook
Ming-Tang Chen
Robert C Davidson
Piotr Bobrowicz
Warren Kett
Elena Brevnova
Thomas I Potgieter
Mark T Mellon
Bianka Prinz
Byung-Kwon Choi
Dongxing Zha
Irina Burnina
John T Bukowski
Min Du
Stefan Wildt
Stephen R Hamilton
Merck & Co., Inc., Rahway, NJ, USA (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The methylotrophic yeast, Pichiapastoris, is an important organism used for the production of therapeutic proteins. However, the presence of fungal-like glycans, either N-linked or O-linked, can elicit an immune response or enable the expressed protein to bind to mannose receptors, thus reducing their efficacy. Previously we have reported the elimination of β-linked glycans in this organism. In the current report we have focused on reducing the O-linked mannose content of proteins produced in P. pastoris, thereby reducing the potential to bind to mannose receptors. The initial step in the synthesis of O-linked glycans in P. pastoris is the transfer of mannose from dolichol-phosphomannose to a target protein in the yeast secretory pathway by members of the protein-O-mannosyltransferase (PMT) family. In this report we identify and characterize the members of the P. pastoris PMT family. Like Candida albicans, P. pastoris has five PMT genes. Based on sequence homology, these PMTs can be grouped into three sub-families, with both PMT1 and PMT2 sub-families possessing two members each (PMT1 and PMT5, and PMT2 and PMT6, respectively). The remaining sub-family, PMT4, has only one member (PMT4). Through gene knockouts we show that PMT1 and PMT2 each play a significant role in O-glycosylation. Both, by gene knockouts and the use of Pmt inhibitors we were able to significantly reduce not only the degree of O-mannosylation, but also the chain-length of these glycans. Taken together, this reduction of O-glycosylation represents an important step forward in developing the P. pastoris platform as a suitable system for the production of therapeutic glycoproteins.

Indexed as

Candida albicansGene Knockout TechniquesGenes, FungalGlycosylationMannosyltransferasesPhylogenyPichiaPolysaccharidesMannosyltransferasesPolysaccharidesprotein O-mannosyltransferase

Identifiers

PMID23840891
PMCPMC3698189
OpenAlexW1964791395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.