ArticlePloS one2013
Link Clustering with Extended Link Similarity and EQ Evaluation Division.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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6 citing papers in PubMed.
- Advancing edge-based clustering and graph embedding for biological network analysis: a case study in RASopathies.Briefings in bioinformatics · 2025Article
- A multi-objective evolutionary algorithm for detecting protein complexes in PPI networks using gene ontology.Scientific reports · 2025Article
- Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai rice.Genes · 2018Article
- A Central Edge Selection Based Overlapping Community Detection Algorithm for the Detection of Overlapping Structures in Protein⁻Protein Interaction Networks.Molecules (Basel, Switzerland) · 2018Article
- Article
- Overlapping Community Detection based on Network Decomposition.Scientific reports · 2016Article
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5 authors.
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Abstract
Link Clustering (LC) is a relatively new method for detecting overlapping communities in networks. The basic principle of LC is to derive a transform matrix whose elements are composed of the link similarity of neighbor links based on the Jaccard distance calculation; then it applies hierarchical clustering to the transform matrix and uses a measure of partition density on the resulting dendrogram to determine the cut level for best community detection. However, the original link clustering method does not consider the link similarity of non-neighbor links, and the partition density tends to divide the communities into many small communities. In this paper, an Extended Link Clustering method (ELC) for overlapping community detection is proposed. The improved method employs a new link similarity, Extended Link Similarity (ELS), to produce a denser transform matrix, and uses the maximum value of EQ (an extended measure of quality of modularity) as a means to optimally cut the dendrogram for better partitioning of the original network space. Since ELS uses more link information, the resulting transform matrix provides a superior basis for clustering and analysis. Further, using the EQ value to find the best level for the hierarchical clustering dendrogram division, we obtain communities that are more sensible and reasonable than the ones obtained by the partition density evaluation. Experimentation on five real-world networks and artificially-generated networks shows that the ELC method achieves higher EQ and In-group Proportion (IGP) values. Additionally, communities are more realistic than those generated by either of the original LC method or the classical CPM method.
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