Evidence map›Paper›PMID 23839867›Full record

ArticlePlant physiology2013

Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.

Yasufumi Kobayashi, Yuriko Kobayashi, Toshihiro Watanabe, Jon E Shaff, Hiroyuki Ohta, Leon V Kochian, Tadao Wagatsuma, Thomas B Kinraide, Hiroyuki Koyama

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 76 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Yasufumi KobayashiFaculty of Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan.
Yuriko Kobayashi
Toshihiro Watanabe
Jon E Shaff
Hiroyuki Ohta
Leon V Kochian
Tadao Wagatsuma
Thomas B Kinraide
Hiroyuki Koyama
Gifu University · JPUnited States Department of Agriculture · USCornell University · USHokkaido University · JPTokyo Institute of Technology · JPYamagata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Al³⁺ and H⁺ toxicities predicted to occur at moderately acidic conditions (pH [water] = 5-5.5) in low-Ca soils were characterized by the combined approaches of computational modeling of electrostatic interactions of ions at the root plasma membrane (PM) surface and molecular/physiological analyses in Arabidopsis (Arabidopsis thaliana). Root growth inhibition in known hypersensitive mutants was correlated with computed {Al³⁺} at the PM surface ({Al³⁺}(PM)); inhibition was alleviated by increased Ca, which also reduced {Al³⁺}(PM) and correlated with cellular Al responses based on expression analysis of genes that are markers for Al stress. The Al-inducible Al tolerance genes ALUMINUM-ACTIVATED MALATE TRANSPORTER1 and ALUMINUM SENSITIVE3 were induced by levels of {Al³⁺}(PM) too low to inhibit root growth in tolerant genotypes, indicating that protective responses are triggered when {Al³⁺}(PM) was below levels that can initiate injury. Modeling of the H⁺ sensitivity of the SENSITIVE TO PROTON RHIZOTOXICITY1 knockout mutant identified a Ca alleviation mechanism of H⁺ rhizotoxicity, possibly involving stabilization of the cell wall. The phosphatidate phosphohydrolase1 (pah1) pah2 double mutant showed enhanced Al susceptibility under low-P conditions, where greater levels of negatively charged phospholipids in the PM occur, which increases {Al³⁺}(PM) through increased PM surface negativity compared with wild-type plants. Finally, we found that the nonalkalinizing Ca fertilizer gypsum improved the tolerance of the sensitive genotypes in moderately acidic soils. These findings fit our modeling predictions that root toxicity to Al³⁺ and H⁺ in moderately acidic soils involves interactions between both toxic ions in relation to Ca alleviation.

Indexed as

AluminumArabidopsisArabidopsis ProteinsCalciumCell MembraneGene Knockout TechniquesHydrogenHydrogen-Ion ConcentrationModels, GeneticPlant RootsSoilStress, PhysiologicalAluminumArabidopsis ProteinsCalciumHydrogenSoil

Identifiers

PMID23839867
PMCPMC3762639
OpenAlexW2143548447

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.