Evidence map›Paper›PMID 23838958›Full record

ArticlePlant signaling & behavior2013

Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.

Monica Carabelli, Luana Turchi, Valentino Ruzza, Giorgio Morelli, Ida Ruberti

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  4. AFrontiers in plant science · 2024
    Article
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  6. Identification ofFrontiers in plant science · 2023
    Article
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  11. Multiple Links between HD-Zip Proteins and Hormone Networks.International journal of molecular sciences · 2018
    Review
  12. Article
  13. Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Monica CarabelliInstitute of Molecular Biology and Pathology; National Research Council; Rome, Italy.
Luana Turchi
Valentino Ruzza
Giorgio Morelli
Ida Ruberti
Institute of Molecular Biology and Pathology · ITNational Academies of Sciences, Engineering, and Medicine · USConsiglio per la ricerca in agricoltura e l’analisi dell’economia agraria · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arabidopsis genome encodes 10 Homeodomain-Leucine Zipper (HD-Zip) II transcription factors that can be subdivided into 4 clades (α-δ). All the γ (ARABIDOPSIS THALIANA HOMEOBOX 2 [ATHB2], HOMEOBOX ARABIDOPSIS THALIANA 1 [HAT1], HAT2) and δ (HAT3, ATHB4) genes are regulated by light quality changes (Low Red [R]/Far-Red [FR]) that induce the shade avoidance response in most of the angiosperms. HD-Zip IIγ and HD-Zip IIδ transcription factors function as positive regulators of shade avoidance, and there is evidence that at least ATHB2 is directly positively regulated by the basic Helix-Loop-Helix (bHLH) proteins PHYTOCHROME INTERACTING FACTOR 4 (PIF4) and PIF5. Recent evidence demonstrate that, in addition to their function in shade avoidance, HD-Zip IIγ and HD-Zip IIδ proteins play an essential role in plant development from embryogenesis onwards in a white light environment.

Indexed as

Leucine ZippersPlant DevelopmentArabidopsisArabidopsis ProteinsHomeodomain ProteinsLightTranscription FactorsArabidopsis ProteinsHomeodomain ProteinsTranscription FactorsArabidopsisauxinbHLH transcription factorsembryo patterningHD-Zip III transcription factorsorgan polarityshade avoidance

Identifiers

PMID23838958
PMCPMC4002598
OpenAlexW2063288910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.