Evidence map›Paper›PMID 23837633›Full record

ArticleBiochemistry2013

The N-terminal basolateral targeting signal unlikely acts alone in the differential trafficking of membrane transporters in MDCK cells.

Shiu-Ming Kuo, Li-Yuan Wang, Siyuan Yu, Christine E Campbell, Sujith A Valiyaparambil, Mark Rance, Kenneth M Blumenthal

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Life and Death of Fungal Transporters under the Challenge of Polarity.International journal of molecular sciences · 2020
    Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Shiu-Ming KuoDepartment of Exercise and Nutrition Sciences, University at Buffalo, Buffalo, NY 14214.
Li-Yuan Wang *Department of Exercise and Nutrition Sciences, University at Buffalo, Buffalo, NY 14214.
Siyuan Yu *Department of Exercise and Nutrition Sciences, University at Buffalo, Buffalo, NY 14214.
Christine E CampbellDepartment of Biochemistry, University at Buffalo, Buffalo, NY 14214.
Sujith A ValiyaparambilDepartment of Biochemistry, University at Buffalo, Buffalo, NY 14214.
Mark RanceDept. of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio 45267.
Kenneth M BlumenthalDepartment of Biochemistry, University at Buffalo, Buffalo, NY 14214.
University at Buffalo, State University of New York · USUniversity of Cincinnati Medical Center · US

Funding

Protein Dynamics in Homeodomain/DNA ComplexesR01GM063855 · NIGMS · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2003 to 2012
$2.6M
800 MHz NMR console replacementS10RR027755 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2010 to 2010
$358k
CRYOPROBE FOR 800 MHZ NMR SPECT: STRUC BIOL: BACTERIAL PROTEINS, CARDIAC MUSCLE S10RR019077 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2004 to 2004
$345k
NCRR NIH HHS RR027755NCRR NIH HHS RR19077NCRR NIH HHS S10 RR019077NCRR NIH HHS S10 RR027755NIGMS NIH HHS R01 GM063855NIGMS NIH HHS R01GM063855
6 · The paper itself

Abstract

We have shown previously, using confocal imaging and transport assays, that the N-terminus of sodium-dependent vitamin C transporter 2 (SVCT2) can redirect apical SVCT1 to the basolateral membrane. Here, the SVCT model was used to further characterize the basolateral targeting peptide signal. Both the length (31 amino acids) and sequence accuracy of the N-terminus of SVCT2 were found to be important in basolateral targeting activity, suggesting a structural requirement. However, the N-terminal basolateral targeting sequence did not appear to act alone, based on analyses of heterologous chimeras. Although diverse N-terminal basolateral targeting signals from multipass membrane proteins can all redirect apical protein from the same gene family to the basolateral membrane, none of the N-terminal basolateral targeting signals can redirect the transmembrane and C-terminal regions from a different gene family. Instead, the presence of these heterologous N-terminal basolateral targeting signals affected the trafficking of otherwise apical protein, causing their accumulation in a stable tubulin-like non-actin structure. Nontargeting N-terminal sequences had no effect. Similar protein retention was observed previously and in this study when the C-terminus of apical or basolateral protein was mutated. These results suggest that the N- and C-termini interact, directly or indirectly, within each gene family for basolateral targeting. Circular dichroism and two-dimensional nuclear magnetic resonance analyses both found a lack of regular secondary structure in the conserved N-terminus of SVCT2, consistent with the presence of partner(s) in the targeting unit. Our finding, a departure from the prevailing single-peptide motif model, is consistent with the evolution of basolateral transporters from the corresponding apical genes. The interaction among the N-terminus, its partner(s), and the cellular basolateral targeting machinery needs to be further elucidated.

Indexed as

Models, BiologicalProtein Sorting SignalsAmino Acid SequenceAnimalsCell MembraneCell PolarityConserved SequenceDogsGreen Fluorescent ProteinsHumansMadin Darby Canine Kidney CellsMutant Chimeric ProteinsMutant ProteinsPeptide FragmentsProtein ConformationProtein Interaction Domains and Motifsenhanced green fluorescent proteinGreen Fluorescent ProteinsMutant Chimeric ProteinsMutant ProteinsPeptide FragmentsProtein Sorting SignalsRecombinant Fusion ProteinsSLC23A1 protein, humanSLC23A2 protein, humanSodium-Coupled Vitamin C Transporters

Identifiers

PMID23837633
PMCPMC3779144
OpenAlexW2078950036

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.