Evidence map›Paper›PMID 23835779›Full record

ArticleJournal of cardiovascular translational research2013

Association of genetic variation with gene expression and protein abundance within the natriuretic peptide pathway.

David E Lanfear, Bipin Sunkara, Jia Li, Sharad Rastogi, Ramesh C Gupta, Badri Padhukasahasram, L Keoki Williams, Hani N Sabbah

Open access · greenAbstract read
In one paragraph

Article in Journal of cardiovascular translational research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Practical Pharmacogenomic Approaches to Heart Failure Therapeutics.Current treatment options in cardiovascular medicine · 2016
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

David E LanfearDepartment of Internal Medicine, Division of Cardiology, Henry Ford Heart and Vascular Institute, Henry Ford Hospital, Detroit, MI, USA, dlanfea1@hfhs.org.
Bipin Sunkara
Jia Li
Sharad Rastogi
Ramesh C Gupta
Badri Padhukasahasram
L Keoki Williams
Hani N Sabbah
Henry Ford Hospital · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
Impact of Race and Genetic Factors on Beta-blocker Effectiveness in Heart FailureR01HL103871 · NHLBI · HENRY FORD HEALTH SYSTEM · PI LANFEAR, DAVID E · 2011 to 2015
$3.5M
Pharmacogenetics of the B-type Natriuretic Peptide PathwayK23HL085124 · NHLBI · HENRY FORD HEALTH SYSTEM · PI LANFEAR, DAVID E · 2008 to 2012
$632k
NCI NIH HHS P30 CA091842NCI NIH HHS P30 CA91842NHLBI NIH HHS HL085124NHLBI NIH HHS HL103871NHLBI NIH HHS K23 HL085124NHLBI NIH HHS L30 HL082148NHLBI NIH HHS R01 HL103871
6 · The paper itself

Abstract

The natriuretic peptide (NP) system is a critical physiologic pathway in heart failure with wide individual variability in functioning. We investigated the genetic component by testing the association of single nucleotide polymorphisms (SNP) with RNA and protein expression. Samples of DNA, RNA, and tissue from human kidney (n = 103) underwent genotyping, RT-PCR, and protein quantitation (in lysates), for four candidate genes [NP receptor 1 (NPR1), NPR2, and NPR3 and membrane metalloendopeptidase]. The association of genetic variation with expression was tested using linear regression for individual SNPs, and a principal components (PC) method for overall gene variation. Eleven SNPs in NPR2 were significantly associated with protein expression (false discovery rate ≤0.05), but not RNA quantity. RNA and protein quantity correlated poorly with each other. The PC analysis showed only NPR2 as significant. Assessment of the clinical impact of NPR2 genetic variation is needed.

Indexed as

Polymorphism, Single NucleotideAtrial Natriuretic Factor Receptor BGene Expression RegulationGene FrequencyGenetic MarkersHumansKidneyLinear ModelsNeprilysinPrincipal Component AnalysisReceptors, Atrial Natriuretic FactorRNAatrial natriuretic factor receptor AAtrial Natriuretic Factor Receptor Batrial natriuretic factor receptor CGenetic MarkersNeprilysinReceptors, Atrial Natriuretic FactorRNA

Identifiers

PMID23835779
PMCPMC3795918
OpenAlexW2026805063

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.