ArticleBMC genomics2013
A high-resolution cucumber cytogenetic map integrated with the genome assembly.
Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
16 citing papers in PubMed.
- Cyto-molecular characterization of rDNA and chromatin composition in the NOR-associated satellite in Chestnut (Castanea spp.).Scientific reports · 2024Article
- Comparative karyotype analysis of eight Cucurbitaceae crops using fluorochrome banding and 45S rDNA-FISH.Comparative cytogenetics · 2023Article
- Comparative Chromosomal Localization of 45S and 5S rDNA Sites in 76 Purple-Fleshed Sweet Potato Cultivars.Plants (Basel, Switzerland) · 2020Article
- Small RNA sequencing revealed various microRNAs involved in ethylene-triggered flowering process in Aechmea fasciata.Scientific reports · 2020Article
- A chromosome-scale genome assembly of cucumber (Cucumis sativus L.).GigaScience · 2019Article
- Impact of Chromosomal Rearrangements on the Interpretation of Lupin Karyotype Evolution.Genes · 2019Article
- Article
- Cytogenetic maps of homoeologous chromosomes AComparative cytogenetics · 2017Article
- Article
- QTL mapping for downy mildew resistance in cucumber via bulked segregant analysis using next-generation sequencing and conventional methods.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016Article
- Screening and chromosome localization of two cotton BAC clones.Comparative cytogenetics · 2016Article
- A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons.Molecular cytogenetics · 2016Article
- Dynamics of sex expression and chromosome diversity in Cucurbitaceae: a story in the making.Journal of genetics · 2015Review
- Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly.BMC genomics · 2015Article
- Construction of cytogenetic map of Gossypium herbaceum chromosome 1 and its integration with genetic maps.Molecular cytogenetics · 2015Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundHigh-resolution cytogenetic map can provide not only important biological information on genome organization but also solid foundation for genetic and genomic research. The progress in the molecular and cytogenetic studies has created the basis for developing the cytogenetic map in cucumber (Cucumis sativus L.).
resultsHere, the cytogenetic maps of four cucumber chromosomes (chromosomes 1, 3-5) were constructed by fluorescence in situ hybridization (FISH) analysis on cucumber pachytene chromosomes. Together with our previously constructed cytogenetic maps of three cucumber chromosomes (chromosomes 2, 6-7), cucumber has a complete cytogenetic map with 76 anchoring points between the genetic, the cytogenetic and the draft genome assembly maps. To compare our pachytene FISH map directly to the genetic linkage and draft genome assembly maps, we used a standardized map unit-relative map position (RMP) to produce the comparative map alignments. The alignments allowed a global view of the relationship of genetic and physical distances along each cucumber chromosome, and accuracy and coverage of the draft genome assembly map.
conclusionsWe demonstrated a good correlation between positions of the markers in the linkage and physical maps, and essentially complete coverage of chromosome arms by the draft genome assembly. Our study not only provides essential information for the improvement of sequence assembly but also offers molecular tools for cucumber genomics research, comparative genomics and evolutionary study.
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