Evidence map›Paper›PMID 23834488›Full record

ArticleBMC genomics2013

Global Rsh-dependent transcription profile of Brucella suis during stringent response unravels adaptation to nutrient starvation and cross-talk with other stress responses.

Nabil Hanna, Safia Ouahrani-Bettache, Kenneth L Drake, L Garry Adams, Stephan Köhler, Alessandra Occhialini

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

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  7. Comparative Genome-Wide Transcriptome Analysis ofFrontiers in microbiology · 2021
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  8. Epitope-Based Vaccine of aFrontiers in immunology · 2021
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  12. Review
  13. Transcriptome Analysis ofInternational journal of molecular sciences · 2018
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  16. Review
  17. Article
  18. Systems Biology Analysis of TemporalFrontiers in microbiology · 2017
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  19. Article
  20. Relative Quantitative Proteomic Analysis ofFrontiers in microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Nabil HannaUniversité Montpellier 1, Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), Montpellier, France.
Safia Ouahrani-Bettache
Kenneth L Drake
L Garry Adams
Stephan Köhler
Alessandra Occhialini
Université de Montpellier · FRCentre National de la Recherche Scientifique · FRSeralogix (United States) · USTexas A&M University · US

Funding

WRCE Nonhuman Primate CoreU54AI057156 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI WALKER, DAVID H · 2003 to 2013
$102.6M
NIAID NIH HHS 2U54AI057156-06
6 · The paper itself

Abstract

backgroundIn the intracellular pathogen Brucella spp., the activation of the stringent response, a global regulatory network providing rapid adaptation to growth-affecting stress conditions such as nutrient deficiency, is essential for replication in the host. A single, bi-functional enzyme Rsh catalyzes synthesis and hydrolysis of the alarmone (p)ppGpp, responsible for differential gene expression under stringent conditions.

resultscDNA microarray analysis allowed characterization of the transcriptional profiles of the B. suis 1330 wild-type and Δrsh mutant in a minimal medium, partially mimicking the nutrient-poor intramacrophagic environment. A total of 379 genes (11.6% of the genome) were differentially expressed in a rsh-dependent manner, of which 198 were up-, and 181 were down-regulated. The pleiotropic character of the response was confirmed, as the genes encoded an important number of transcriptional regulators, cell envelope proteins, stress factors, transport systems, and energy metabolism proteins. Virulence genes such as narG and sodC, respectively encoding respiratory nitrate reductase and superoxide dismutase, were under the positive control of (p)ppGpp, as well as expression of the cbb3-type cytochrome c oxidase, essential for chronic murine infection. Methionine was the only amino acid whose biosynthesis was absolutely dependent on stringent response in B. suis.

conclusionsThe study illustrated the complexity of the processes involved in adaptation to nutrient starvation, and contributed to a better understanding of the correlation between stringent response and Brucella virulence. Most interestingly, it clearly indicated (p)ppGpp-dependent cross-talk between at least three stress responses playing a central role in Brucella adaptation to the host: nutrient, oxidative, and low-oxygen stress.

Indexed as

Gene Expression ProfilingAdaptation, PhysiologicalAnimalsBacterial ProteinsBrucella suisElectron Transport Complex IVMacrophagesMethionineMiceMutationNitrate ReductaseOligonucleotide Array Sequence AnalysisStress, PhysiologicalSuperoxide DismutaseUp-RegulationVacuolesBacterial ProteinsElectron Transport Complex IVMethionineNitrate ReductaseSuperoxide Dismutase

Identifiers

PMID23834488
PMCPMC3710219
OpenAlexW2089184777

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.