Evidence map›Paper›PMID 23833681›Full record

ArticleCommunications in computational physics2013

Effect of the Reaction Field on Molecular Forces and Torques Revealed by an Image-Charge Solvation Model.

Wei Song, Yuchun Lin, Andrij Baumketner, Shaozhong Deng, Wei Cai, Donald J Jacobs

Abstract read
In one paragraph

Article in Communications in computational physics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Wei SongDepartments of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28262, USA.
Yuchun Lin
Andrij Baumketner
Shaozhong Deng
Wei Cai
Donald J Jacobs

Funding

Fast and Accurate Numerical Methods of Electrostatic Interactions in BiomoleculesR01GM083600 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI CAI, WEI · 2007 to 2010
$1.4M
High Performance Computing in Computational BiologyS10RR026514 · NCRR · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI LIVESAY, DENNIS R · 2010 to 2010
$474k
NCRR NIH HHS S10 RR026514NIGMS NIH HHS R01 GM083600
6 · The paper itself

Abstract

We recently developed the Image-Charge Solvation Model (ICSM), which is an explicit/implicit hybrid model to accurately account for long-range electrostatic forces in molecular dynamics simulations [Lin et al., J. Chem. Phys., 131, 154103, 2009]. The ICSM has a productive spherical volume within the simulation cell for which key physical properties of bulk water are reproduced, such as density, radial distribution function, diffusion constants and dielectric properties. Although the reaction field (RF) is essential, it typically accounts for less than 2% of the total electrostatic force on a water molecule. This observation motivates investigating further the role of the RF within the ICSM. In this report we focus on distributions of forces and torques on water molecules as a function of distance from the origin and make extensive tests over a range of model parameters where Coulomb forces are decomposed into direct interactions from waters modeled explicitly and the RF. Molecular torques due to the RF typically account for 20% of the total torque, revealing why the RF plays an important role in the dielectric properties of simulated water. Moreover, it becomes clear that the buffer layer in the ICSM is essential to mitigate artifacts caused by the discontinuous change in dielectric constants at the explicit/implicit interface.

Indexed as

dipole momentforce distributionImage chargesreaction fieldtorque distribution

Identifiers

PMID23833681
PMCPMC3702192

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