Evidence map›Paper›PMID 23832012›Full record

ArticleNature genetics2013

Somatic SETBP1 mutations in myeloid malignancies.

Hideki Makishima, Kenichi Yoshida, Nhu Nguyen, Bartlomiej Przychodzen, Masashi Sanada, Yusuke Okuno, Kwok Peng Ng, Kristbjorn O Gudmundsson, Bandana A Vishwakarma, Andres Jerez and 20 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 158 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
158citing papers in PubMed, 3 pooled it
19.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

158 citing papers in PubMed, 3 syntheses or guidelines pooled it, 266 citations in OpenAlex.

  1. Pooled it
  2. Myelodysplastic syndromes, version 2.2015.Journal of the National Comprehensive Cancer Network : JNCCN · 2015
    Guideline
  3. Guideline
  4. Trial
  5. Efficacy of Ruxolitinib in Patients With Chronic Neutrophilic Leukemia and Atypical Chronic Myeloid Leukemia.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2020
    Trial
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Expanding the Spectrum ofJournal of clinical medicine · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article

98 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 9 institutions in 3 countries.

Hideki MakishimaDepartment of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Kenichi Yoshida
Nhu Nguyen
Bartlomiej Przychodzen
Masashi Sanada
Yusuke Okuno
Kwok Peng Ng
Kristbjorn O Gudmundsson
Bandana A Vishwakarma
Andres Jerez
Ines Gomez-Segui
Mariko Takahashi
Yuichi Shiraishi
Yasunobu Nagata
Kathryn Guinta
Hiraku Mori
Mikkael A Sekeres
Kenichi Chiba
Hiroko Tanaka
Hideki Muramatsu
Hirotoshi Sakaguchi
Ronald L Paquette
Michael A McDevitt
Seiji Kojima
Yogen Saunthararajah
Satoru Miyano
Lee-Yung Shih
Yang Du
Seishi Ogawa
Jaroslaw P Maciejewski
Cleveland Clinic · USThe University of Tokyo · JPUniformed Services University of the Health Sciences · USNagoya University · JPChang Gung Memorial Hospital · TWJohns Hopkins University · USKyoto University · JPShowa University · JPUniversity of California, Los Angeles · US

Funding

Role of Setbp1 in leukemic stem cell self-renewalR01CA143193 · NCI · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI DU, YANG · 2010 to 2014
$1.5M
Predisposition to chromosomal alterations in MDSR01HL082983 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2008
$1.5M
Training/Research Center-Bone Marrow Failure SyndromesK24HL077522 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2014
$1.2M
LASER SCANNING CONFOCAL MICROSCOPE: NEUROSCIENCES10RR019391 · NCRR · UNIVERSITY OF LOUISVILLE · PI EPSTEIN, PAUL N. · 2004 to 2004
$315k
NCI NIH HHS R01 CA-143193NCI NIH HHS R01 CA143193NCRR NIH HHS S10 RR019391NCRR NIH HHS U54 RR019391NHLBI NIH HHS K24 HL-077522NHLBI NIH HHS K24 HL077522NHLBI NIH HHS R01 HL-082983NHLBI NIH HHS R01 HL082983
6 · The paper itself

Abstract

Here we report whole-exome sequencing of individuals with various myeloid malignancies and identify recurrent somatic mutations in SETBP1, consistent with a recent report on atypical chronic myeloid leukemia (aCML). Closely positioned somatic SETBP1 mutations encoding changes in Asp868, Ser869, Gly870, Ile871 and Asp880, which match germline mutations in Schinzel-Giedion syndrome (SGS), were detected in 17% of secondary acute myeloid leukemias (sAML) and 15% of chronic myelomonocytic leukemia (CMML) cases. These results from deep sequencing demonstrate a higher mutational detection rate than reported with conventional sequencing methodology. Mutant cases were associated with advanced age and monosomy 7/deletion 7q (-7/del(7q)) constituting poor prognostic factors. Analysis of serially collected samples indicated that SETBP1 mutations were acquired during leukemic evolution. Transduction with mutant Setbp1 led to the immortalization of mouse myeloid progenitors that showed enhanced proliferative capacity compared to cells transduced with wild-type Setbp1. Somatic mutations of SETBP1 seem to cause gain of function, are associated with myeloid leukemic transformation and convey poor prognosis in myelodysplastic syndromes (MDS) and CMML.

Indexed as

MutationAdolescentAdultAgedAged, 80 and overAmino Acid SequenceAnimalsBase SequenceBone Marrow CellsCarrier ProteinsCell Transformation, NeoplasticCluster AnalysisExomeFemaleHigh-Throughput Nucleotide SequencingHumansCarrier ProteinsNuclear ProteinsSETBP1 protein, human

Identifiers

PMID23832012
PMCPMC3729750
OpenAlexW2086704257

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.