Evidence map›Paper›PMID 23831759›Full record

ArticleNature chemical biology2013

Mapping the functional yeast ABC transporter interactome.

Jamie Snider, Asad Hanif, Mid Eum Lee, Ke Jin, Analyn R Yu, Chris Graham, Matthew Chuk, Dunja Damjanovic, Marta Wierzbicka, Priscilla Tang and 15 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 85 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

Jamie SniderDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.
Asad Hanif
Mid Eum Lee
Ke Jin
Analyn R Yu
Chris Graham
Matthew Chuk
Dunja Damjanovic
Marta Wierzbicka
Priscilla Tang
Dina Balderes
Victoria Wong
Matthew Jessulat
Katelyn D Darowski
Bryan-Joseph San Luis
Igor Shevelev
Stephen L Sturley
Charles Boone
Jack F Greenblatt
Zhaolei Zhang
Christian M Paumi
Mohan Babu
Hay-Oak Park
Susan Michaelis
Igor Stagljar
University of Toronto · CAUniversity of Regina · CAColumbia University Irving Medical Center · USThe Ohio State University · USJohns Hopkins Medicine · USUniversity of Kentucky · US

Funding

Trafficking of ABC proteins in yeastR01GM051508 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MICHAELIS, SUSAN D. · 1994 to 2010
$3.3M
Regulation of polarized cell growth by GTPasesR01GM076375 · NIGMS · OHIO STATE UNIVERSITY · PI PARK, HAY-OAK · 2006 to 2009
$1.3M
CIHRNIGMS NIH HHS R01 GM051508NIGMS NIH HHS R01 GM076375NIGMS NIH HHS R01-GM51508NIGMS NIH HHS R01-GM76375
6 · The paper itself

Abstract

ATP-binding cassette (ABC) transporters are a ubiquitous class of integral membrane proteins of immense clinical interest because of their strong association with human disease and pharmacology. To improve our understanding of these proteins, we used membrane yeast two-hybrid technology to map the protein interactome of all of the nonmitochondrial ABC transporters in the model organism Saccharomyces cerevisiae and combined this data with previously reported yeast ABC transporter interactions in the BioGRID database to generate a comprehensive, integrated 'interactome'. We show that ABC transporters physically associate with proteins involved in an unexpectedly diverse range of functions. We specifically examine the importance of the physical interactions of ABC transporters in both the regulation of one another and in the modulation of proteins involved in zinc homeostasis. The interaction network presented here will be a powerful resource for increasing our fundamental understanding of the cellular role and regulation of ABC transporters.

Indexed as

Protein Interaction MappingATP-Binding Cassette TransportersProtein BindingSaccharomyces cerevisiaeTwo-Hybrid System TechniquesATP-Binding Cassette Transporters

Identifiers

PMID23831759
PMCPMC3835492
OpenAlexW2026265784

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.