Evidence map›Paper›PMID 23831758›Full record

ArticleNature chemical biology2013

Synthetic glycopeptides reveal the glycan specificity of HIV-neutralizing antibodies.

Mohammed N Amin, Jason S McLellan, Wei Huang, Jared Orwenyo, Dennis R Burton, Wayne C Koff, Peter D Kwong, Lai-Xi Wang

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 111 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Recent Advances in the Chemical Biology ofMolecules (Basel, Switzerland) · 2021
    Review
  14. Chemoenzymatic Synthesis of HIV-1 Glycopeptide Antigens.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  15. Review
  16. Protein and Glycan Mimicry in HIV Vaccine Design.Journal of molecular biology · 2019
    Review
  17. Review
  18. Article
  19. Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Mohammed N AminInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Jason S McLellan
Wei Huang
Jared Orwenyo
Dennis R Burton
Wayne C Koff
Peter D Kwong
Lai-Xi Wang
University of Maryland, Baltimore · USInternational AIDS Vaccine Initiative · USNational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · US

Funding

Design Of ImmunogensZIAAI005024 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$21.5M
Covergent Chemoenzymatic Synthesis of Glycopeptides and GlycoproteinsR01GM080374 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI WANG, LAI-XI · 2007 to 2021
$3.9M
Synthetic Variable Domain Glycopeptides for Neutralizing Epitope CharacterizationR21AI101035 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI PAUZA, C. DAVID · 2012 to 2013
$411k
Intramural NIH HHSNIAID NIH HHS 1R21AI101035NIAID NIH HHS R21 AI101035NIGMS NIH HHS R01 GM080374
6 · The paper itself

Abstract

A new class of glycan-reactive HIV-neutralizing antibodies, including PG9 and PG16, has been recently discovered that seem to recognize previously uncharacterized glycopeptide epitopes on HIV-1 gp120. However, further characterization and reconstitution of the precise neutralizing epitopes are complicated by the heterogeneity of glycosylation. We report here the design, synthesis and antigenic evaluation of new cyclic V1V2 glycopeptides carrying defined N-linked glycans at the conserved glycosylation sites (Asn160 and Asn156 or Asn173) derived from gp120 of two HIV-1 isolates. Antibody binding studies confirmed the necessity of a Man₅GlcNAc₂ glycan at Asn160 for recognition by PG9 and PG16 and further revealed a critical role of a sialylated N-glycan at the secondary site (Asn156 or Asn173) in the context of glycopeptides for antibody binding. In addition to defining the glycan specificities of PG9 and PG16, the identified synthetic glycopeptides provide a valuable template for HIV-1 vaccine design.

Indexed as

AIDS VaccinesAntibodies, NeutralizingEpitopesGlycopeptidesHIV-1PolysaccharidesAIDS VaccinesAntibodies, NeutralizingEpitopesGlycopeptidesPolysaccharides

Identifiers

PMID23831758
PMCPMC3730851
OpenAlexW1983768506

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.