Evidence map›Paper›PMID 23830516›Full record

ArticleAmerican journal of human genetics2013

Two susceptibility loci to Takayasu arteritis reveal a synergistic role of the IL12B and HLA-B regions in a Japanese population.

Chikashi Terao, Hajime Yoshifuji, Akinori Kimura, Takayoshi Matsumura, Koichiro Ohmura, Meiko Takahashi, Masakazu Shimizu, Takahisa Kawaguchi, Zhiyong Chen, Taeko K Naruse and 22 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 3 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 3 syntheses or guidelines pooled it, 163 citations in OpenAlex.

  1. Transethnic meta-analysis identifiesAnnals of the rheumatic diseases · 2017
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  20. Animal models for large vessel vasculitis - The unmet need.Rheumatology and immunology research · 2023
    Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 8 institutions in 1 country.

Chikashi TeraoCenter for Genomic Medicine, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan; Department of Rheumatology and Clinical Immunology, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan. Electronic address: a0001101@kuhp.kyoto-u.ac.jp.
Hajime Yoshifuji
Akinori Kimura
Takayoshi Matsumura
Koichiro Ohmura
Meiko Takahashi
Masakazu Shimizu
Takahisa Kawaguchi
Zhiyong Chen
Taeko K Naruse
Aiko Sato-Otsubo
Yusuke Ebana
Yasuhiro Maejima
Hideyuki Kinoshita
Kosaku Murakami
Daisuke Kawabata
Yoko Wada
Ichiei Narita
Junichi Tazaki
Yasushi Kawaguchi
Hisashi Yamanaka
Kimiko Yurugi
Yasuo Miura
Taira Maekawa
Seishi Ogawa
Issei Komuro
Ryozo Nagai
Ryo Yamada
Yasuharu Tabara
Mitsuaki Isobe
Tsuneyo Mimori
Fumihiko Matsuda
Kyoto University · JPTokyo Medical and Dental University · JPThe University of Tokyo · JPKyoto University Hospital · JPNiigata University · JPTokyo Women's Medical University · JPJichi Medical University · JPOsaka Red Cross Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Takayasu arteritis (TAK) is an autoimmune systemic vasculitis of unknown etiology. Although previous studies have revealed that HLA-B*52:01 has an effect on TAK susceptibility, no other genetic determinants have been established so far. Here, we performed genome scanning of 167 TAK cases and 663 healthy controls via Illumina Infinium Human Exome BeadChip arrays, followed by a replication study consisting of 212 TAK cases and 1,322 controls. As a result, we found that the IL12B region on chromosome 5 (rs6871626, overall p = 1.7 × 10(-13), OR = 1.75, 95% CI 1.42-2.16) and the MLX region on chromosome 17 (rs665268, overall p = 5.2 × 10(-7), OR = 1.50, 95% CI 1.28-1.76) as well as the HLA-B region (rs9263739, a proxy of HLA-B*52:01, overall p = 2.8 × 10(-21), OR = 2.44, 95% CI 2.03-2.93) exhibited significant associations. A significant synergistic effect of rs6871626 and rs9263739 was found with a relative excess risk of 3.45, attributable proportion of 0.58, and synergy index of 3.24 (p ≤ 0.00028) in addition to a suggestive synergistic effect between rs665268 and rs926379 (p ≤ 0.027). We also found that rs6871626 showed a significant association with clinical manifestations of TAK, including increased risk and severity of aortic regurgitation, a representative severe complication of TAK. Detection of these susceptibility loci will provide new insights to the basic mechanisms of TAK pathogenesis. Our findings indicate that IL12B plays a fundamental role on the pathophysiology of TAK in combination with HLA-B(∗)52:01 and that common autoimmune mechanisms underlie the pathology of TAK and other autoimmune disorders such as psoriasis and inflammatory bowel diseases in which IL12B is involved as a genetic predisposing factor.

Indexed as

Genetic Predisposition to DiseaseAdultAgedAsian PeopleBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCase-Control StudiesChromosomes, Human, Pair 17Chromosomes, Human, Pair 5FemaleGenetic LinkageHLA-B52 AntigenHumansInterleukin-12 Subunit p40MaleMiddle AgedMutationBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsHLA-B*52:01 antigenHLA-B52 AntigenIL12B protein, humanInterleukin-12 Subunit p40MLX protein, human

Identifiers

PMID23830516
PMCPMC3738822
OpenAlexW1986836420

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.