Evidence map›Paper›PMID 23828894›Full record

ArticleMolecular & cellular proteomics : MCP2013

Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics.

Christoph Schmutz, Erik Ahrné, Christoph A Kasper, Therese Tschon, Isabel Sorg, Roland F Dreier, Alexander Schmidt, Cécile Arrieumerlou

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 57 citations in OpenAlex.

  1. Profiling Selectivity for theBiochemistry · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Phosphoproteomics data-driven signalling network inference: Does it work?Computational and structural biotechnology journal · 2023
    Article
  7. Article
  8. Review
  9. The T3SS ofMicroorganisms · 2020
    Review
  10. Review
  11. Article
  12. Microbiology spectrum · 2019
    Review
  13. Article
  14. Article
  15. PeerJ · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Global Proteomics RevealedFrontiers in cellular and infection microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Christoph SchmutzBiozentrum, University of Basel, Klingelbergstrasse 50/70, 4056 Basel, Switzerland.
Erik Ahrné
Christoph A Kasper
Therese Tschon
Isabel Sorg
Roland F Dreier
Alexander Schmidt
Cécile Arrieumerlou
University of Basel · CHUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enteroinvasive bacterium Shigella flexneri invades the intestinal epithelium of humans. During infection, several injected effector proteins promote bacterial internalization, and interfere with multiple host cell responses. To obtain a systems-level overview of host signaling during infection, we analyzed the global dynamics of protein phosphorylation by liquid chromatography-tandem MS and identified several hundred of proteins undergoing a phosphorylation change during the first hours of infection. Functional bioinformatic analysis revealed that they were mostly related to the cytoskeleton, transcription, signal transduction, and cell cycle. Fuzzy c-means clustering identified six temporal profiles of phosphorylation and a functional module composed of ATM-phosphorylated proteins related to genotoxic stress. Pathway enrichment analysis defined mTOR as the most overrepresented pathway. We showed that mTOR complex 1 and 2 were required for S6 kinase and AKT activation, respectively. Comparison with a published phosphoproteome of Salmonella typhimurium-infected cells revealed a large subset of coregulated phosphoproteins. Finally, we showed that S. flexneri effector OspF affected the phosphorylation of several hundred proteins, thereby demonstrating the wide-reaching impact of a single bacterial effector on the host signaling network.

Indexed as

AnimalsBacterial ProteinsCell LineDysentery, BacillaryHeLa CellsHost-Pathogen InteractionsHumansMicePhosphoproteinsPhosphorylationProteomicsSalmonella typhiShigella flexneriBacterial ProteinsPhosphoproteins

Identifiers

PMID23828894
PMCPMC3790303
OpenAlexW2163390166

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.