ReviewCell stem cell2013
Browsing (Epi)genomes: a guide to data resources and epigenome browsers for stem cell researchers.
Review in Cell stem cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed.
- Toxicoepigenetics for Risk Assessment: Bridging the Gap Between Basic and Regulatory Science.Epigenetics insights · 2022Article
- Using sound to understand protein sequence data: new sonification algorithms for protein sequences and multiple sequence alignments.BMC bioinformatics · 2021Article
- Epigenetic Classification of Human Mesenchymal Stromal Cells.Stem cell reports · 2016Article
- Non-CG DNA methylation is a biomarker for assessing endodermal differentiation capacity in pluripotent stem cells.Nature communications · 2016Article
- Dynamic Changes in Occupancy of Histone Variant H2A.Z during Induced Somatic Cell Reprogramming.Stem cells international · 2016Article
- Publisher’s Note:Abstraction for data integration:Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction.Computational biology and chemistry · 2015Article
- Epigenetic biomarker to support classification into pluripotent and non-pluripotent cells.Scientific reports · 2015Article
- Functional interpretation of non-coding sequence variation: concepts and challenges.BioEssays : news and reviews in molecular, cellular and developmental biology · 2014Article
- chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome.Nucleic acids research · 2014Article
- The future of neuroepigenetics in the human brain.Progress in molecular biology and translational science · 2014Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Over the past years we have witnessed an explosion in the generation of freely available genome-wide data sets, including maps of various histone modifications, transcription factor binding, DNase hypersensitivity, and DNA methylation, which provide valuable resources for data validation, exploration, and hypothesis generation. The goal of this review is to provide the reader with information on where to find many of the data sets and how to utilize the various (epi)genome browsers for display and initial analysis. We provide selected examples to highlight key features and demonstrate the application of these browsers to stem cell biology.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.