Evidence map›Paper›PMID 23827685›Full record

ArticleCell2013

An extracellular interactome of immunoglobulin and LRR proteins reveals receptor-ligand networks.

Engin Özkan, Robert A Carrillo, Catharine L Eastman, Richard Weiszmann, Deepa Waghray, Karl G Johnson, Kai Zinn, Susan E Celniker, K Christopher Garcia

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 252 citations in OpenAlex.

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  15. A gene expression atlas of a juvenile nervous system.bioRxiv : the preprint server for biology · 2025
    Article
  16. Hippo signaling regulates cuticle pigmentation and dopamine metabolism inbioRxiv : the preprint server for biology · 2025
    Article
  17. FETCH enables fluorescent labeling of membrane proteins in vivo with spatiotemporal control inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Article
  20. Article

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Engin ÖzkanDepartments of Molecular and Cellular Physiology and Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Robert A Carrillo
Catharine L Eastman
Richard Weiszmann
Deepa Waghray
Karl G Johnson
Kai Zinn
Susan E Celniker
K Christopher Garcia
Stanford University · USCalifornia Institute of Technology · USLawrence Berkeley National Laboratory · USPomona College · US

Funding

MOLECULAR GENETICS OF DROSOPHILA CNS DEVELOPMENTR01NS028182 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Engin Ozkan, KAI G ZINN · 1990 to 2026
$7.3M
Universal Clone Resources for Drosophila ProteomicsP41HG003487 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CELNIKER, SUSAN E · 2005 to 2013
$4.6M
Molecular Genetics of CNS DevelopmentR37NS028182 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ZINN, KAI G · 2014 to 2020
$3.3M
Synaptic target selection in DrosophilaR01NS062821 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ZINN, KAI G · 2009 to 2013
$2.1M
Howard Hughes Medical InstituteNHGRI NIH HHS P41 HG003487NHGRI NIH HHS P41HG3487NINDS NIH HHS NS28182NINDS NIH HHS NS62821NINDS NIH HHS R01 NS028182NINDS NIH HHS R01 NS062821NINDS NIH HHS R37 NS028182
6 · The paper itself

Abstract

Extracellular domains of cell surface receptors and ligands mediate cell-cell communication, adhesion, and initiation of signaling events, but most existing protein-protein "interactome" data sets lack information for extracellular interactions. We probed interactions between receptor extracellular domains, focusing on a set of 202 proteins composed of the Drosophila melanogaster immunoglobulin superfamily (IgSF), fibronectin type III (FnIII), and leucine-rich repeat (LRR) families, which are known to be important in neuronal and developmental functions. Out of 20,503 candidate protein pairs tested, we observed 106 interactions, 83 of which were previously unknown. We "deorphanized" the 20 member subfamily of defective-in-proboscis-response IgSF proteins, showing that they selectively interact with an 11 member subfamily of previously uncharacterized IgSF proteins. Both subfamilies interact with a single common "orphan" LRR protein. We also observed interactions between Hedgehog and EGFR pathway components. Several of these interactions could be visualized in live-dissected embryos, demonstrating that this approach can identify physiologically relevant receptor-ligand pairs.

Indexed as

Protein Interaction MapsAmino Acid SequenceAnimalsDrosophila melanogasterDrosophila ProteinsFibronectinsImmunoglobulinsLeucine-Rich Repeat ProteinsLigandsMolecular Sequence DataPhylogenyProteinsProtein Structure, TertiaryReceptors, Cell SurfaceSequence AlignmentDrosophila ProteinsFibronectinsImmunoglobulinsLeucine-Rich Repeat ProteinsLigandsProteinsReceptors, Cell Surface

Identifiers

PMID23827685
PMCPMC3756661
OpenAlexW2122955107

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.