Evidence map›Paper›PMID 23827257›Full record

ArticleJournal of structural biology2014

Rational design of a zinc phthalocyanine binding protein.

Andrew C Mutter, Jessica A Norman, Michael T Tiedemann, Sunaina Singh, Sha Sha, Sara Morsi, Ismail Ahmed, Martin J Stillman, Ronald L Koder

Abstract read
In one paragraph

Article in Journal of structural biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Designing heterotropically activated allosteric conformational switches using supercharging.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Andrew C MutterDepartment of Physics, The City College of New York, New York, NY 10031, United States.
Jessica A NormanDepartment of Physics, The City College of New York, New York, NY 10031, United States.
Michael T TiedemannDepartment of Chemistry, The University of Western Ontario, Ontario, Canada.
Sunaina SinghDepartment of Physics, The City College of New York, New York, NY 10031, United States.
Sha ShaDepartment of Physics, The City College of New York, New York, NY 10031, United States.
Sara MorsiDepartment of Physics, The City College of New York, New York, NY 10031, United States.
Ismail AhmedDepartment of Biochemistry, The City College of New York, New York, NY 10031, United States.
Martin J StillmanDepartment of Physics, The City College of New York, New York, NY 10031, United States.
Ronald L KoderDepartment of Physics, The City College of New York, New York, NY 10031, United States. Electronic address: koder@sci.ccny.cuny.edu.
City College of New York · USWestern University · CA

Funding

TNC FUNCTION IN APOPTOTIC ANTIGEN DRIVEN AUTOIMMUNITYG12RR003060 · NCRR · CITY COLLEGE OF NEW YORK · PI WALLMAN, JOSHUA · 1985 to 2011
$26.1M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
MARC HONORS UNDERGRADUATE RESEARCH TRAINING PROGRAMT34GM007639 · NIGMS · CITY COLLEGE OF NEW YORK · PI LEVITT, JONATHAN B · 1985 to 2022
$4.7M
NCRR NIH HHS 5G12 RR03060NCRR NIH HHS G12 RR003060NIGMS NIH HHS T34 GM007639NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Phthalocyanines have long been used as primary donor molecules in synthetic light-powered devices due to their superior properties when compared to natural light activated molecules such as chlorophylls. Their use in biological contexts, however, has been severely restricted due to their high degree of self-association, and its attendant photoquenching, in aqueous environments. To this end we report the rational redesign of a de novo four helix bundle di-heme binding protein into a heme and Zinc(II) phthalocyanine (ZnPc) dyad in which the ZnPc is electronically and photonically isolated. The redesign required transformation of the homodimeric protein into a single chain four helix bundle and the addition of a negatively charge sulfonate ion to the ZnPc macrocycle. To explore the role of topology on ZnPc binding two constructs were made and the resulting differences in affinity can be explained by steric interference of the newly added connecting loop. Singular binding of ZnPc was verified by absorption, fluorescence, and magnetic circular dichroism spectroscopy. The engineering guidelines determined here, which enable the simple insertion of a monomeric ZnPc binding site into an artificial helical bundle, are a robust starting point for the creation of functional photoactive nanodevices.

Indexed as

Amino Acid SubstitutionBinding SitesHemeHemeproteinsIndolesIsoindolesModels, MolecularMutagenesis, Site-DirectedOrganometallic CompoundsProtein BindingProtein StabilityProtein Structure, SecondaryZinc CompoundsHemeHemeproteinsIndolesIsoindolesOrganometallic CompoundsZinc CompoundsZn(II)-phthalocyanineMagnetic circular dichroismProtein designZinc(II) phthalocyanineZinc(II) phthalocyanine monosulfonate

Identifiers

PMID23827257
PMCPMC4244077
OpenAlexW2016286328

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.