ArticleBMC evolutionary biology2013
A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change.
Article in BMC evolutionary biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
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Who cites it
51 citing papers in PubMed.
- The dynamics of introgression and parallel adaptation across North AmericanProceedings of the National Academy of Sciences of the United States of America · 2026Article
- Article
- Evolutionary conservation of the grape sex-determining region in angiosperms and emergence of dioecy in Vitaceae.Nature communications · 2025Article
- Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting in the rapidly radiated East Asian genus Nekemias (Vitaceae).Annals of botany · 2025Article
- Phylogenomic analyses support a new subgenus,Frontiers in plant science · 2025Article
- Genome-Wide Association Study of Grape Texture Based on Puncture.International journal of molecular sciences · 2024Article
- Decoding the Chloroplast Genome ofInternational journal of molecular sciences · 2024Article
- Chloroplast Genomes ofGenes · 2024Article
- Morphological Characterization of FossilPlants (Basel, Switzerland) · 2024Article
- A super-pangenome of the North American wild grape species.Genome biology · 2023Article
- Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa.BMC genomics · 2023Article
- The mature phyllosphere microbiome of grapevine is associated with resistance againstFrontiers in microbiology · 2023Article
- Species relationships within the genus Vitis based on molecular and morphological data.PloS one · 2023Article
- Evaluating the persistence and utility of five wild Vitis species in the context of climate change.Molecular ecology · 2022Article
- Coastal Wild Grapevine Accession (Plants (Basel, Switzerland) · 2022Article
- Tannin phenotyping of the Vitaceae reveals a phylogenetic linkage of epigallocatechin in berries and leaves.Annals of botany · 2022Article
- The Role of Biostimulants as Alleviators of Biotic and Abiotic Stresses in Grapevine: A Review.Plants (Basel, Switzerland) · 2022Review
- Genetic Diversity of Wild and Cultivated Muscadine Grapes (Frontiers in plant science · 2022Article
- Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation.Genome biology · 2021Article
- Assessment of Chemopreventive Potential of the Plant Extracts against Liver Cancer Using HepG2 Cell Line.Molecules (Basel, Switzerland) · 2021Article
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6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundGrapes are one of the most economically important fruit crops. There are about 60 species in the genus Vitis. The phylogenetic relationships among these species are of keen interest for the conservation and use of this germplasm. We selected 309 accessions from 48 Vitis species,varieties, and outgroups, examined ~11 kb (~3.4 Mb total) of aligned nuclear DNA sequences from 27 unlinked genes in a phylogenetic context, and estimated divergence times based on fossil calibrations.
resultsVitis formed a strongly supported clade. There was substantial support for species and less for the higher-level groupings (series). As estimated from extant taxa, the crown age of Vitis was 28 Ma and the divergence of subgenera (Vitis and Muscadinia) occurred at ~18 Ma. Higher clades in subgenus Vitis diverged 16 - 5 Ma with overlapping confidence intervals, and ongoing divergence formed extant species at 12 - 1.3 Ma. Several species had species-specific SNPs. NeighborNet analysis showed extensive reticulation at the core of subgenus Vitis representing the deeper nodes, with extensive reticulation radiating outward. Fitch Parsimony identified North America as the origin of the most recent common ancestor of extant Vitis species.
conclusionsPhylogenetic patterns suggested origination of the genus in North America, fragmentation of an ancestral range during the Miocene, formation of extant species in the late Miocene-Pleistocene, and differentiation of species in the context of Pliocene-Quaternary tectonic and climatic change. Nuclear SNPs effectively resolved relationships at and below the species level in grapes and rectified several misclassifications of accessions in the repositories. Our results challenge current higher-level classifications, reveal the abundance of genetic diversity in the genus that is potentially available for crop improvement, and provide a valuable resource for species delineation, germplasm conservation and use.
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