Evidence map›Paper›PMID 23826142›Full record

ArticlePloS one2013

MicroRNA and piRNA profiles in normal human testis detected by next generation sequencing.

Qingling Yang, Juan Hua, Liu Wang, Bo Xu, Huan Zhang, Nan Ye, Zhiqiang Zhang, Dexin Yu, Howard J Cooke, Yuanwei Zhang and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Small RNAs, spermatogenesis, and male infertility: a decade of retrospect.Reproductive biology and endocrinology : RB&E · 2023
    Review
  8. Article
  9. Localization and in silico-based functional analysis of miR-202 in bull testis.Reproduction in domestic animals = Zuchthygiene · 2022
    Article
  10. Review
  11. Article
  12. Seminal Plasma: Relevant for Fertility?International journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. MiRNAs Expression Profiling of Bovine (International journal of molecular sciences · 2020
    Article
  16. piRNAs in Gastric Cancer: A New Approach Towards Translational Research.International journal of molecular sciences · 2020
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Qingling YangHefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, University of Science and Technology of China, Hefei, Anhui, China.
Juan Hua
Liu Wang
Bo Xu
Huan Zhang
Nan Ye
Zhiqiang Zhang
Dexin Yu
Howard J Cooke
Yuanwei Zhang
Qinghua Shi
University of Science and Technology of China · CNAnhui Medical University · CNFourth Affiliated Hospital of Anhui Medical University · CNHefei National Center for Physical Sciences at Nanoscale · CNUniversity of Edinburgh · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMicroRNAs (miRNAs) are the class of small endogenous RNAs that play an important regulatory role in cells by negatively affecting gene expression at transcriptional and post-transcriptional levels. There have been extensive studies aiming to discover miRNAs and to analyze their functions in the cells from a variety of species. However, there are no published studies of miRNA profiles in human testis using next generation sequencing (NGS) technology.

resultsWe employed Solexa sequencing technology to profile miRNAs in normal human testis. Total 770 known and 5 novel human miRNAs, and 20121 piRNAs were detected, indicating that the human testis has a complex population of small RNAs. The expression of 15 known and 5 novel detected miRNAs was validated by qRT-PCR. We have also predicted the potential target genes of the abundant known and novel miRNAs, and subjected them to GO and pathway analysis, revealing the involvement of miRNAs in many important biological phenomenon including meiosis and p53-related pathways that are implicated in the regulation of spermatogenesis.

conclusionsThis study reports the first genome-wide miRNA profiles in human testis using a NGS approach. The presence of large number of miRNAs and the nature of their target genes suggested that miRNAs play important roles in spermatogenesis. Here we provide a useful resource for further elucidation of the regulatory role of miRNAs and piRNAs in the spermatogenesis. It may also facilitate the development of prophylactic strategies for male infertility.

Indexed as

AdultChromosomes, HumanGene Expression ProfilingGene OntologyHigh-Throughput Nucleotide SequencingHumansMaleMicroRNAsReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, Small InterferingSequence Analysis, RNATestisMicroRNAsRNA, Small Interfering

Identifiers

PMID23826142
PMCPMC3691314
OpenAlexW1977911660

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.