Evidence map›Paper›PMID 23825951›Full record

ArticlePLoS pathogens2013

Cellular RNA binding proteins NS1-BP and hnRNP K regulate influenza A virus RNA splicing.

Pei-Ling Tsai, Ni-Ting Chiou, Sharon Kuss, Adolfo García-Sastre, Kristen W Lynch, Beatriz M A Fontoura

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
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  12. Review
  13. Virus Infection and mRNA Nuclear Export.International journal of molecular sciences · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Pei-Ling TsaiDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Ni-Ting Chiou
Sharon Kuss
Adolfo García-Sastre
Kristen W Lynch
Beatriz M A Fontoura
The University of Texas Southwestern Medical Center · USUniversity of Pennsylvania · USIcahn School of Medicine at Mount Sinai · US

Funding

Viral and Host cDNA Libraries from 1918 Influenza CasesP01AI058113 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2004 to 2010
$20.3M
TRIM mediated host antiviral responses during influenza virus infectionsU19AI083025 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2009 to 2013
$10.0M
VIRULENCE FACTORS OF INFLUENZA VIRUS--THE NS1 PROTEINR01AI046954 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2000 to 2010
$3.1M
Novel Inhibitors of Viral ReplicationR01AI089539 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI FONTOURA, BEATRIZ MA, ROTH, MICHAEL G · 2010 to 2014
$2.0M
Using Chemical Biology to Interfere with the Influenza Virus Life CycleR01AI079110 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI FONTOURA, BEATRIZ MA, ROTH, MICHAEL G · 2010 to 2014
$2.0M
Infectious Diseases Training ProgramT32AI070116 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PERL, TRISH M. · 2007 to 2017
$1.1M
NIAID NIH HHS P01 AI058113NIAID NIH HHS R01 AI046954NIAID NIH HHS R01AI046954NIAID NIH HHS R01 AI079110NIAID NIH HHS R01 AI089539NIAID NIH HHS R01AI089539NIAID NIH HHS T32 AI070116NIAID NIH HHS T32AI070116-06NIAID NIH HHS U19 AI083025NIGMS NIH HHS R01 GM07159
6 · The paper itself

Abstract

Influenza A virus is a major human pathogen with a genome comprised of eight single-strand, negative-sense, RNA segments. Two viral RNA segments, NS1 and M, undergo alternative splicing and yield several proteins including NS1, NS2, M1 and M2 proteins. However, the mechanisms or players involved in splicing of these viral RNA segments have not been fully studied. Here, by investigating the interacting partners and function of the cellular protein NS1-binding protein (NS1-BP), we revealed novel players in the splicing of the M1 segment. Using a proteomics approach, we identified a complex of RNA binding proteins containing NS1-BP and heterogeneous nuclear ribonucleoproteins (hnRNPs), among which are hnRNPs involved in host pre-mRNA splicing. We found that low levels of NS1-BP specifically impaired proper alternative splicing of the viral M1 mRNA segment to yield the M2 mRNA without affecting splicing of mRNA3, M4, or the NS mRNA segments. Further biochemical analysis by formaldehyde and UV cross-linking demonstrated that NS1-BP did not interact directly with viral M1 mRNA but its interacting partners, hnRNPs A1, K, L, and M, directly bound M1 mRNA. Among these hnRNPs, we identified hnRNP K as a major mediator of M1 mRNA splicing. The M1 mRNA segment generates the matrix protein M1 and the M2 ion channel, which are essential proteins involved in viral trafficking, release into the cytoplasm, and budding. Thus, reduction of NS1-BP and/or hnRNP K levels altered M2/M1 mRNA and protein ratios, decreasing M2 levels and inhibiting virus replication. Thus, NS1-BP-hnRNPK complex is a key mediator of influenza A virus gene expression.

Indexed as

AnimalsDogsGene Expression Regulation, ViralHeLa CellsHeterogeneous-Nuclear Ribonucleoprotein KHumansInfluenza A virusMadin Darby Canine Kidney CellsNuclear ProteinsProteomicsRNA-Binding ProteinsRNA PrecursorsRNA SplicingRNA, ViralTranscription FactorsViral Nonstructural ProteinsHeterogeneous-Nuclear Ribonucleoprotein KINS1 protein, influenza virusIVNS1ABP protein, humanNuclear ProteinsRNA-Binding ProteinsRNA PrecursorsRNA, ViralTranscription FactorsViral Nonstructural Proteins

Identifiers

PMID23825951
PMCPMC3694860
OpenAlexW2018248223

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.