Evidence map›Paper›PMID 23825636›Full record

ArticlePloS one2013

Expression of Streptococcus pneumoniae Virulence-Related Genes in the Nasopharynx of Healthy Children.

Fuminori Sakai, Sharmila J Talekar, Claudio F Lanata, Carlos G Grijalva, Keith P Klugman, Jorge E Vidal, RESPIRA PERU Group, Investigators Group

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 38 citations in OpenAlex.

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  9. Post-VaccinationMicroorganisms · 2020
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  10. Impact of Laboratory Methods and Gene Targets on Detection ofReports of biochemistry & molecular biology · 2020
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  14. Dynamics of Colonization ofOpen forum infectious diseases · 2018
    Article
  15. Article
  16. Article
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  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
    Lanata, Claudio F [added]; Grijalva, Carlos G [added]; Investigators Group [corrected to RESPIRA PERU Group]
5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Fuminori SakaiHubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, Georgia, United States of America.
Sharmila J Talekar
Claudio F Lanata
Carlos G Grijalva
Keith P Klugman
Jorge E Vidal
RESPIRA PERU Group
Investigators Group
Emory University · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025008 · NCRR · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2007 to 2011
$29.0M
NCRR NIH HHS UL1 RR025008
6 · The paper itself

Abstract

Colonization and persistence in the human nasopharynx are prerequisites for Streptococcus pneumoniae disease and carriage acquisition, which normally occurs during early childhood. Animal models and in vitro studies (i.e. cell adhesion and cell cytotoxicity assays) have revealed a number of colonization and virulence factors, as well as regulators, implicated in nasopharyngeal colonization and pathogenesis. Expression of genes encoding these factors has never been studied in the human nasopharynx. Therefore, this study analyzed expression of S. pneumoniae virulence-related genes in human nasopharyngeal samples. Our experiments first demonstrate that a density of ≥10(4) CFU/ml of S. pneumoniae cells in the nasopharynx provides enough DNA and RNA to amplify the lytA gene by conventional PCR and to detect the lytA message, respectively. A panel of 21 primers that amplified S. pneumoniae sequences was designed, and their specificity for S. pneumoniae sequences was analyzed in silico and validated against 20 related strains inhabitants of the human upper respiratory tract. These primers were utilized in molecular reactions to find out that all samples contained the genes ply, pavA, lytC, lytA, comD, codY, and mgrA, whereas nanA, nanB, pspA, and rrgB were present in ∼91-98% of the samples. Gene expression studies of these 11 targets revealed that lytC, lytA, pavA and comD were the most highly expressed pneumococcal genes in the nasopharynx whereas the rest showed a moderate to low level of expression. This is the first study to evaluate expression of virulence- and, colonization-related genes in the nasopharynx of healthy children and establishes the foundation for future gene expression studies during human pneumococcal disease.

Indexed as

ChildGenes, BacterialHumansNasopharynxPolymerase Chain ReactionStreptococcus pneumoniaeVirulence

Identifiers

PMID23825636
PMCPMC3688971
OpenAlexW1980193876

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.