Evidence map›Paper›PMID 23825590›Full record

ArticlePloS one2013

Identification of an astrovirus commonly infecting laboratory mice in the US and Japan.

Terry Fei Fan Ng, Nikola O Kondov, Nobuhito Hayashimoto, Ritsuki Uchida, Yunhee Cha, Ashley I Beyer, Walt Wong, Patricia A Pesavento, Hiroshi Suemizu, Marcus O Muench and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  9. Article
  10. PCR and RT-PCR in the Diagnosis of Laboratory Animal Infections and in Health Monitoring.Journal of the American Association for Laboratory Animal Science : JAALAS · 2020
    Article
  11. Article
  12. Prevalence of murine astrovirus in laboratory animal facilities in Japan.The Journal of veterinary medical science · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Murine Astrovirus Infection and Transmission in Neonatal CD1 Mice.Journal of the American Association for Laboratory Animal Science : JAALAS · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Terry Fei Fan NgBlood Systems Research Institute, San Francisco, California, United States of America.
Nikola O Kondov
Nobuhito Hayashimoto
Ritsuki Uchida
Yunhee Cha
Ashley I Beyer
Walt Wong
Patricia A Pesavento
Hiroshi Suemizu
Marcus O Muench
Eric Delwart
Blood Systems Research Institute · USCentral Institute for Experimental Animals · JPUniversity of California, Davis · USUniversity of California, San Francisco · US

Funding

Reprogramming iPS Cells with Exogenous and Endogenous Transcription Factor GenesP01DK088760 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRUENERT, DIETER C · 2011 to 2015
$6.5M
Metagenomic detection of emerging viruses in the blood supplyR01HL105770 · NHLBI · VITALANT · PI DELWART, ERIC L · 2011 to 2015
$2.4M
NHLBI NIH HHS R01 HL105770NHLBI NIH HHS R01HL105770NIDDK NIH HHS P01 DK088760NIDDK NIH HHS P01DK088760
6 · The paper itself

Abstract

Mice (Mus musculus) are the most commonly used laboratory animals. Viral metagenomics on tissues of immunodeficient mice revealed sequences of a novel mammalian astrovirus. Using PCR, we screened mice from 4 breeders, 4 pharmaceutical companies, 14 research institutes and 30 universities in the US and Japan. Mice from one US breeder tested positive while none from Japanese breeders were positive for MuAstV. Mice in over half of the universities (19/30), institutes (7/14) and pharmaceutical animal facilities (2/4) investigated revealed the presence of MuAstV. Nine mice strains tested positive including both immunodeficient strains (NSG, NOD-SCID, NSG-3GS, C57BL6-Timp-3 (-/-), and uPA-NOG) and immunocompetent strains (B6J, ICR, Bash2, BALB/c). Our data indicates that MuAstV has a wide geographical, institutional and host strain distribution. Comparison of the MuAstV RdRp sequences showed numerous mutations indicating ongoing viral divergence in different facilities. This study demonstrates the need for metagenomic screening of laboratory animals to identify adventitious infections that may affect experimental outcomes.

Indexed as

AnimalsAnimals, LaboratoryAstroviridaeCecumHumansJapanMetagenomicsMicePolymerase Chain ReactionSpecies SpecificityUnited States

Identifiers

PMID23825590
PMCPMC3692532
OpenAlexW2031642172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.