ArticlePloS one2013
Global transcriptome profiling of Salicornia europaea L. shoots under NaCl treatment.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 56 citations in OpenAlex.
- ROS-Centered Transcriptomic Regulatory Networks Linking Salinity Stress, Antioxidant Defense and Processability Traits inCurrent issues in molecular biology · 2026Review
- Functional Trait Variability ofPlants (Basel, Switzerland) · 2025Article
- Lipid metabolism improves salt tolerance of Salicornia europaea.Annals of botany · 2025Article
- Brackish water irrigation boosts honeysuckle (Frontiers in plant science · 2025Article
- Molecular analysis of the reactions inFrontiers in plant science · 2024Article
- A novel high-affinity potassium transporter SeHKT1;2 from halophyteFrontiers in plant science · 2023Article
- Transcriptome-wide characterization and functional analysis of Xyloglucan endo-transglycosylase/hydrolase (XTH) gene family of Salicornia europaea L. under salinity and drought stress.BMC plant biology · 2021Article
- Bacterial Diversity and Community Structure in the Rhizosphere of Four Halophytes.Current microbiology · 2021Article
- Regulation of Ammonium Cellular Levels is An Important Adaptive Trait for the Euhalophytic Behavior of Salicornia europaea.Plants (Basel, Switzerland) · 2020Article
- Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation.BMC plant biology · 2019Article
- Article
- Bacterial microbiome of root-associated endophytes of Salicornia europaea in correspondence to different levels of salinity.Environmental science and pollution research international · 2018Article
- Looking at Halophytic Adaptation to High Salinity Through Genomics Landscape.Current genomics · 2017Review
- Establishment of a gene function analysis system for the euhalophyte Salicornia europaea L.Plant cell reports · 2017Article
- NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica).Journal of biological research (Thessalonike, Greece) · 2016Article
- Isolation of Endophytic Plant Growth-Promoting Bacteria Associated with the Halophyte Salicornia europaea and Evaluation of their Promoting Activity Under Salt Stress.Current microbiology · 2016Article
- Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq.BMC genomics · 2016Article
- Article
- Comparative proteomics of root plasma membrane proteins reveals the involvement of calcium signalling in NaCl-facilitated nitrate uptake in Salicornia europaea.Journal of experimental botany · 2015Article
- Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes.Scientific reports · 2015Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSoil salinity is a major abiotic stress that limits agriculture productivity worldwide. Salicornia europaea is well adapted to extreme saline environments with more than 1,000 mM NaCl in the soil, so it could serve as an important model species for studying halophilic mechanisms in euhalophytes. To obtain insights into the molecular basis of salt tolerance, we present here the first extensive transcriptome analysis of this species using the Illumina HiSeq™ 2000. PRINCIPAL
findingsA total of 41 and 39 million clean reads from the salt-treated (Se200S) and salt-free (SeCKS) tissues of S. europaea shoots were obtained, and de novo assembly produced 97,865 and 101,751 unigenes, respectively. Upon further assembly with EST data from both Se200S and SeCKS, 109,712 high-quality non-redundant unigenes were generated with a mean unigene size of 639 bp. Additionally, a total of 3,979 differentially expressed genes (DEGs) were detected between the Se200S and SeCKS libraries, with 348 unigenes solely expressed in Se200S and 460 unigenes solely expressed in SeCKS. Furthermore, we identified a large number of genes that are involved in ion homeostasis and osmotic adjustment, including cation transporters and proteins for the synthesis of low-molecular compounds. All unigenes were functionally annotated within the COG, GO and KEGG pathways, and 10 genes were validated by qRT-PCR.
conclusionOur data contains the extensive sequencing and gene-annotation analysis of S. europaea. This genetic knowledge will be very useful for future studies on the molecular adaptation to abiotic stress in euhalophytes and will facilitate the genetic manipulation of other economically important crops.
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