Evidence map›Paper›PMID 23825188›Full record

ArticleThe Journal of experimental medicine2013

The IgH 3' regulatory region controls somatic hypermutation in germinal center B cells.

Pauline Rouaud, Christelle Vincent-Fabert, Alexis Saintamand, Rémi Fiancette, Marie Marquet, Isabelle Robert, Bernardo Reina-San-Martin, Eric Pinaud, Michel Cogné, Yves Denizot

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
  6. Review
  7. Article
  8. The IgHFrontiers in immunology · 2023
    Article
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Pauline RouaudCentre National de la Recherche Scientifique (CNRS) UMR 7276, Université de Limoges, 87025 Limoges, France.
Christelle Vincent-Fabert
Alexis Saintamand
Rémi Fiancette
Marie Marquet
Isabelle Robert
Bernardo Reina-San-Martin
Eric Pinaud
Michel Cogné
Yves Denizot
Centre National de la Recherche Scientifique · FRUniversité de Limoges · FRInserm · FRUniversité de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interactions with cognate antigens recruit activated B cells into germinal centers where they undergo somatic hypermutation (SHM) in V(D)J exons for the generation of high-affinity antibodies. The contribution of IgH transcriptional enhancers in SHM is unclear. The Eμ enhancer upstream of Cμ has a marginal role, whereas the influence of the IgH 3' regulatory region (3'RR) enhancers (hs3a, hs1,2, hs3b, and hs4) is controversial. To clarify the latter issue, we analyzed mice lacking the whole 30-kb extent of the IgH 3'RR. We show that SHM in VH rearranged regions is almost totally abrogated in 3'RR-deficient mice, whereas the simultaneous Ig heavy chain transcription rate is only partially reduced. In contrast, SHM in κ light chain genes remains unaltered, acquitting for any global SHM defect in our model. Beyond class switch recombination, the IgH 3'RR is a central element that controls heavy chain accessibility to activation-induced deaminase modifications including SHM.

Indexed as

3' Untranslated RegionsRegulatory Sequences, Nucleic AcidSomatic Hypermutation, ImmunoglobulinAICDA (Activation-Induced Cytidine Deaminase)AnimalsB-LymphocytesChromatin ImmunoprecipitationCytidine DeaminaseGene ExpressionGene Expression RegulationGerminal CenterImmunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin Variable RegionMiceMice, Knockout3' Untranslated RegionsAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseImmunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin Variable Region

Identifiers

PMID23825188
PMCPMC3727322
OpenAlexW2153506782

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.