Evidence map›Paper›PMID 23825181›Full record

ArticleEukaryotic cell2013

Cks1 enhances transcription efficiency at the GAL1 locus by linking the Paf1 complex to the 19S proteasome.

Yen-Ru Pan, Michael Sun, James Wohlschlegel, Steven I Reed

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yen-Ru PanDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, California, USA.
Michael Sun
James Wohlschlegel
Steven I Reed
Scripps Research Institute · US

Funding

CKS PROTEINS IN CELL CYCLE CONTROL AND TUMOROGENESISR01CA074224 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI REED, STEVEN I · 1997 to 2012
$4.6M
CONTROL OF CELL DIVISION IN YEASTR37GM038328 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI REED, STEVEN I · 2000 to 2009
$4.3M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
STUDIES ON THE CONTROL OF CELL DIVISION IN YEASTR01GM038328 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI REED, STEVEN I · 1987 to 1999
–
NCI NIH HHS CA074224NCI NIH HHS R01 CA074224NIGMS NIH HHS GM038328NIGMS NIH HHS R01 GM038328NIGMS NIH HHS R01 GM089778NIGMS NIH HHS R37 GM038328
6 · The paper itself

Abstract

Cks1 was originally identified based on genetic interactions with CDC28, the gene that encodes Cdk1 in the budding yeast Saccharomyces cerevisiae. Subsequent work has shown that Cks1 binds Cdc28 and modulates its activity against certain substrates. However, the Cks1/Cdc28 complex also has a role in transcriptional chromatin remodeling not related to kinase activity. In order to elucidate protein networks associated with Cks1 transcriptional functions, proteomic analysis was performed on immunoaffinity-purified Cks1, identifying a physical interaction with the Paf1 complex. Specifically, we found that the Paf1 complex component Rtf1 interacts directly with Cks1 and that this interaction is essential for efficient recruitment of Cks1 to chromatin in the context of GAL1 gene induction. We further found that Cks1 in this capacity serves as an adaptor allowing Rtf1 to recruit 19S proteasome particles, shown to be required for efficient RNA production from some rapidly inducible genes such as GAL1.

Indexed as

Transcription, GeneticAdaptor Proteins, Signal TransducingCell Cycle ProteinsChromatinGalactokinaseGene Expression Regulation, FungalGenetic LociNuclear ProteinsProteasome Endopeptidase ComplexProtein BindingProteomeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationAdaptor Proteins, Signal TransducingCell Cycle ProteinsChromatinCKS1 protein, S cerevisiaeGAL1 protein, S cerevisiaeGalactokinaseNuclear ProteinsPAF1 protein, S cerevisiaeProteasome Endopeptidase ComplexProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID23825181
PMCPMC3811570
OpenAlexW2102366810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.