Evidence map›Paper›PMID 23825129›Full record

ArticleEndocrinology2013

Detection of islet β-cell death in vivo by multiplex PCR analysis of differentially methylated DNA.

Marisa M Fisher, Cristina N Perez Chumbiauca, Kieren J Mather, Raghavendra G Mirmira, Sarah A Tersey

Registry-linked trialOpen access · bronzeAbstract readComparative StudyValidation Study
In one paragraph

Article in Endocrinology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04139369 (Study of DNA Methylation in Children and Adolescents With Type 1 Diabetes Mellitus), which is not on this map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04139369 completednot on this map

Study of DNA Methylation in Children and Adolescents With Type 1 Diabetes Mellitus

TypeobservationalSponsorAristotle University Of ThessalonikiRan2012 to 2018Enrolled40ConditionsType 1 Diabetes Mellitus
3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 46 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Metabolic memory: mechanisms and diseases.Signal transduction and targeted therapy · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. The role of beta-cell dysfunction in early type 1 diabetes.Current opinion in endocrinology, diabetes, and obesity · 2020
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Episodic β-cell death and dedifferentiation during diet-induced obesity and dysglycemia in male mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Marisa M FisherDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA.
Cristina N Perez Chumbiauca
Kieren J Mather
Raghavendra G Mirmira
Sarah A Tersey
Indiana University – Purdue University Indianapolis · USIndiana University School of Medicine

Funding

Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Transcriptional Mechanisms Governing Beta Cell DifferentiationR01DK060581 · NIDDK · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Raghavendra G Mirmira · 2002 to 2026
$8.5M
Short-Term Training Program In Biomedical SciencesT35HL110854 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI Brittney-Shea Herbert, Catherine Rufatto Sears · 2012 to 2026
$3.4M
Chromatin Cofactors in Islet Development and FunctionR01DK083583 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI MIRMIRA, RAGHAVENDRA G · 2010 to 2013
$1.2M
Indiana Clinical and Translational Science Institute-K12 ProgramKL2TR000163 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI SHEKHAR, ANANTHA · 2012 to 2013
$720k
NCATS NIH HHS KL2 TR000163NCATS NIH HHS UL1 TR001108NHLBI NIH HHS T35 HL110854NIDDK NIH HHS R01 DK060581NIDDK NIH HHS R01 DK083583
6 · The paper itself

Abstract

Noninvasive detection of early β-cell death in type 1 diabetes might identify individuals in whom therapeutic interventions would preserve β-cell mass and prevent hyperglycemia. Recent studies in mice have shown that β-cell death produces a corresponding increase in unmethylated preproinsulin (PPI) DNA in serum. Here, we report the development of a novel assay using dual fluorescent-probe multiplex PCR (TaqMan) to detect differential methylation of circulating PPI DNA. Key assay features include low background signals, linear assay output across a large range of values, and simultaneous detection of methylated and unmethylated PPI DNA in a single reaction. We defined the "unmethylation index" as a summary parameter that reflects the relative amounts of unmethylated vs methylated PPI DNA. To validate this assay's ability to detect β-cell death in vivo, we measured the unmethylation index in the serum of diabetic mouse models, including high- and multiple low-dose streptozotocin-induced diabetes, and the nonobese diabetic mouse model of type 1 diabetes. Our data show a significantly increased unmethylation index concordant with the known timeline of β-cell death that precedes the onset of hyperglycemia. Subsequently, we observed a decrease in the unmethylation index following diabetes development, likely reflecting the absence of further β-cell death in the pancreas. We conclude that simultaneous measurement of methylated and unmethylated PPI DNA using the multiplex PCR method described here is a readily available and sensitive indicator of dying β-cells that may be useful to track diabetes progression and response to therapeutic intervention.

Indexed as

Cell DeathDisease Models, AnimalDNA MethylationAlgorithmsAnimalsApoptosisDiabetes Mellitus, Type 1DNAFemaleInsulinInsulin-Secreting CellsMaleMiceMice, Inbred StrainsMice, SCIDMultiplex Polymerase Chain ReactionDNAInsulinpreproinsulinProtein Precursors

Identifiers

PMID23825129
PMCPMC3749470
OpenAlexW2118515851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.