Evidence map›Paper›PMID 23824729›Full record

SynthesisThe American journal of clinical nutrition2013

Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.

Joyce B J van Meurs, Guillaume Pare, Stephen M Schwartz, Aditi Hazra, Toshiko Tanaka, Sita H Vermeulen, Ioana Cotlarciuc, Xin Yuan, Anders Mälarstig, Stefania Bandinelli and 48 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in The American journal of clinical nutrition, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed, 10 pooled it
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed, 10 syntheses or guidelines pooled it, 206 citations in OpenAlex.

  1. Pooled it
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  4. Guideline
  5. A Meta-Prediction ofInternational journal of environmental research and public health · 2018
    Pooled it
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  11. Article
  12. Article
  13. Common Methylenetetrahydrofolate Reductase PolymorphismDiagnostics (Basel, Switzerland) · 2025
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. The Interrelationship between Preconception Folate Nutritional Intake and Child Genetic Liability in the Risk of Childhood Acute Lymphoblastic Leukemia.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Article
  19. Homocysteine and risk of interstitial lung disease: A mendelian randomization approach to causal inference.Sarcoidosis, vasculitis, and diffuse lung diseases : official journal of WASOG · 2025
    Article
  20. Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

58 authors at 1 institution in 1 country.

Joyce B J van MeursDepartment of Internal Medicine, Erasmus MC, Rotterdam, the Netherlands.
Guillaume Pare
Stephen M Schwartz
Aditi Hazra
Toshiko Tanaka
Sita H Vermeulen
Ioana Cotlarciuc
Xin Yuan
Anders Mälarstig
Stefania Bandinelli
Joshua C Bis
Henk Blom
Morris J Brown
Constance Chen
Yii-Der Chen
Robert J Clarke
Abbas Dehghan
Jeanette Erdmann
Luigi Ferrucci
Anders Hamsten
Albert Hofman
David J Hunter
Anuj Goel
Andrew D Johnson
Sekar Kathiresan
Ellen Kampman
Douglas P Kiel
Lambertus A L M Kiemeney
John C Chambers
Peter Kraft
Jan Lindemans
Barbara McKnight
Christopher P Nelson
Christopher J O'Donnell
Bruce M Psaty
Paul M Ridker
Fernando Rivadeneira
Lynda M Rose
Udo Seedorf
David S Siscovick
Heribert Schunkert
Jacob Selhub
Per M Ueland
Peter Vollenweider
Gérard Waeber
Dawn M Waterworth
Hugh Watkins
Jacqueline C M Witteman
Martin den Heijer
Paul Jacques
Andre G Uitterlinden
Jaspal S Kooner
Dan J Rader
Muredach P Reilly
Vincent Mooser
Daniel I Chasman
Nilesh J Samani
Kourosh R Ahmadi
Erasmus MC · NL

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrea L Hevener · 2003 to 2026
$40.4M
Structural Determinants Of Ceruloplasmin Inflammatory ActivityP01HL076491 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI HAZEN, STANLEY L · 2004 to 2019
$27.3M
Cardiovascular Genomics and Bioinformatics projectsZIAHL006170 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI JOHNSON, ANDREW · 2013 to 2025
$25.3M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
Regression of Atherosclerosis CoreP01HL098055 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI DIDONATO, JOSEPH · 2010 to 2014
$12.1M
REGULATION OF MONOCYTE 15-LIPOXYGENASE EXPRESSIONP01HL087018 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI SILVERSTEIN, ROY L · 2007 to 2011
$11.4M
Exceptional Survival: Trajectories to Functional Aging (CHS All Stars)R01AG023629 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NEWMAN, ANNE B. · 2004 to 2016
$9.5M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
CHS Events Follow-up StudyR01HL080295 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2009 to 2014
$6.3M
WGA Study to Identify Genetic Variants Associated with CV Events in CHSR01HL087652 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2007 to 2009
$5.1M
A Genome-wide Association Study for Early-Onset Myocardial InfarctionR01HL087676 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI ALTSHULER, DAVID · 2007 to 2009
$4.7M
Arthritis Research UKBritish Heart Foundation SP/04/002Cancer Research UKCIHR MOP172605CIHR MOP77682CIHR MOP--82810Department of HealthIntramural NIH HHSMedical Research Council G0601966Medical Research Council G0700931Medical Research Council MC_U137686857NCATS NIH HHS UL1 TR000124NCI NIH HHS R03CA133937-01A1NCRR NIH HHS UL1RR033176NHLBI NIH HHS 1R01HL103931-01NHLBI NIH HHS HL054711NHLBI NIH HHS HL075366NHLBI NIH HHS HL080295NHLBI NIH HHS HL087647NHLBI NIH HHS HL087652NHLBI NIH HHS HL105756NHLBI NIH HHS N01 HC-15103NHLBI NIH HHS N01-HC-25195NHLBI NIH HHS N01-HC-35129NHLBI NIH HHS N01-HC-45133NHLBI NIH HHS N01-HC-55015NHLBI NIH HHS N01-HC-55016NHLBI NIH HHS N01-HC-55018NHLBI NIH HHS N01-HC-55019NHLBI NIH HHS N01-HC-55020NHLBI NIH HHS N01-HC-55021NHLBI NIH HHS N01-HC-55022NHLBI NIH HHS N01 HC-55222NHLBI NIH HHS N01-HC-75150NHLBI NIH HHS N01-HC-85079NHLBI NIH HHS N01-HC-85080NHLBI NIH HHS N01-HC-85081NHLBI NIH HHS N01-HC-85082NHLBI NIH HHS N01-HC-85083NHLBI NIH HHS N01-HC-85084NHLBI NIH HHS N01-HC-85085NHLBI NIH HHS N01-HC-85086NHLBI NIH HHS N01-HC-85239NHLBI NIH HHS N02-HL-6-4278NHLBI NIH HHS P01HL076491-06NHLBI NIH HHS P01HL087018NHLBI NIH HHS P01 HL098055NHLBI NIH HHS R01 HL087676NHLBI NIH HHS R01HL089650-02NHLBI NIH HHS R01 HL105756NIA NIH HHS AG-023629NIA NIH HHS AG-027058NIA NIH HHS AG-15928NIA NIH HHS AG-20098NIA NIH HHS N01-AG-12100NIA NIH HHS R01 AR/AG 41398NIDDK NIH HHS DK063491NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01DK080732NIMHD NIH HHS 263 MD 821336NIMHD NIH HHS 263 MD 9164Wellcome Trust 084723/Z/08/ZWellcome Trust 090532
6 · The paper itself

Abstract

backgroundThe strong observational association between total homocysteine (tHcy) concentrations and risk of coronary artery disease (CAD) and the null associations in the homocysteine-lowering trials have prompted the need to identify genetic variants associated with homocysteine concentrations and risk of CAD.

objectiveWe tested whether common genetic polymorphisms associated with variation in tHcy are also associated with CAD.

designWe conducted a meta-analysis of genome-wide association studies (GWAS) on tHcy concentrations in 44,147 individuals of European descent. Polymorphisms associated with tHcy (P < 10(⁻⁸) were tested for association with CAD in 31,400 cases and 92,927 controls.

resultsCommon variants at 13 loci, explaining 5.9% of the variation in tHcy, were associated with tHcy concentrations, including 6 novel loci in or near MMACHC (2.1 × 10⁻⁹), SLC17A3 (1.0 × 10⁻⁸), GTPB10 (1.7 × 10⁻⁸), CUBN (7.5 × 10⁻¹⁰), HNF1A (1.2 × 10⁻¹²)), and FUT2 (6.6 × 10⁻⁹), and variants previously reported at or near the MTHFR, MTR, CPS1, MUT, NOX4, DPEP1, and CBS genes. Individuals within the highest 10% of the genotype risk score (GRS) had 3-μmol/L higher mean tHcy concentrations than did those within the lowest 10% of the GRS (P = 1 × 10⁻³⁶). The GRS was not associated with risk of CAD (OR: 1.01; 95% CI: 0.98, 1.04; P = 0.49).

conclusionsWe identified several novel loci that influence plasma tHcy concentrations. Overall, common genetic variants that influence plasma tHcy concentrations are not associated with risk of CAD in white populations, which further refutes the causal relevance of moderately elevated tHcy concentrations and tHcy-related pathways for CAD.

Indexed as

GenesGenetic LociGenotypePolymorphism, GeneticCoronary Artery DiseaseGenetic Predisposition to DiseaseHomocysteineHumansRisk FactorsHomocysteine

Identifiers

PMID23824729
PMCPMC4321227
OpenAlexW2170739303

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.