Evidence map›Paper›PMID 23824602›Full record

ArticleChembiochem : a European journal of chemical biology2013

Phage display to identify Nedd8-mimicking peptides as inhibitors of the Nedd8 transfer cascade.

Bo Zhao, Keya Zhang, Eric B Villhauer, Karan Bhuripanyo, Hiroaki Kiyokawa, Hermann Schindelin, Jun Yin

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. SUMO-mimicking peptides inhibiting protein SUMOylation.Chembiochem : a European journal of chemical biology · 2014
    Article
  7. Synthesis and screening of peptide libraries with free C-termini.Current topics in peptide & protein research · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bo ZhaoDepartment of Chemistry, University of Chicago, 929 E57th Street, Chicago, IL 60637, USA.
Keya Zhang
Eric B Villhauer
Karan Bhuripanyo
Hiroaki Kiyokawa
Hermann Schindelin
Jun Yin

Funding

Orthogonal Ubiquitin Transfer to Profile E3 Substrate Specificity.R01GM104498 · NIGMS · UNIVERSITY OF CHICAGO · PI KIYOKAWA, HIROAKI, YIN, JUN · 2013 to 2021
$3.2M
Role of Cdc25A in breast cancerR01CA112282 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI KIYOKAWA, HIROAKI · 2005 to 2015
$2.7M
NCI NIH HHS R01 CA112282NCI NIH HHS R01-CA112282NIGMS NIH HHS R01 GM104498PHS HHS 1R01M104498
6 · The paper itself

Abstract

The Nedd8 activating enzyme (NAE) launches the transfer of the ubiquitin-like protein Nedd8 through an enzymatic cascade to covalently modify a diverse array of proteins, thus regulating their biological functions in the cell. The C-terminal peptide of Nedd8 extends deeply into the active site of NAE and plays an important role in the specific recognition of Nedd8 by NAE. We used phage display to profile C-terminal mutant sequences of Nedd8 that could be recognized by NAE for the activation reaction. We found that NAE can accommodate diverse changes in the Nedd8 C-terminal sequence (⁷¹ LALRGG⁷⁶), including Arg and Ile replacing Leu71, Leu, Ser, and Gln replacing Ala72, and substitutions by bulky aromatic residues at positions 73 and 74. We also observed that short peptides corresponding to the C-terminal sequences of the Nedd8 variants can be activated by NAE to form peptide~NAE thioester conjugates. Once NAE is covalently loaded with these Nedd8-mimicking peptides, it can no longer activate full-length Nedd8 for transfer to the neddylation targets, such as the cullin subunits of cullin-RING E3 ubiquitin ligases (CRLs). We have thus developed a new method to inhibit protein neddylation by Nedd8-mimicking peptides.

Indexed as

Amino Acid SequenceBinding SitesCatalytic DomainCrystallography, X-RayHumansKineticsMutagenesisNEDD8 ProteinPeptide LibraryPeptidesUbiquitinsNEDD8 ProteinNEDD8 protein, humanPeptide LibraryPeptidesUbiquitinsenzyme inhibitorsNedd8Nedd8 activating enzymespeptidesphage display

Identifiers

PMID23824602
PMCPMC3822002

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.