Evidence map›Paper›PMID 23824185›Full record

ArticleThe Journal of biological chemistry2013

Regulation of inositol metabolism is fine-tuned by inositol pyrophosphates in Saccharomyces cerevisiae.

Cunqi Ye, W M M S Bandara, Miriam L Greenberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  12. The Key Role of IPMolecules (Basel, Switzerland) · 2020
    Review
  13. Pho85 and PI(4,5)PBiochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Article
  14. Article
  15. Article
  16. ITPK1 mediates the lipid-independent synthesis of inositol phosphates controlled by metabolism.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Cunqi YeDepartment of Biological Sciences, Wayne State University, Detroit, Michigan 48202, USA.
W M M S Bandara
Miriam L Greenberg
Wayne State University · US

Funding

A NOVEL MECHANISM OF REGULATION OF INOSITOL BIOSYNTHESIS IN YEASTR01DK081367 · NIDDK · WAYNE STATE UNIVERSITY · PI GREENBERG, MIRIAM L · 2009 to 2012
$1.5M
NIDDK NIH HHS R01 DK081367
6 · The paper itself

Abstract

Although inositol pyrophosphates have diverse roles in phosphate signaling and other important cellular processes, little is known about their functions in the biosynthesis of inositol and phospholipids. Here, we show that KCS1, which encodes an inositol pyrophosphate kinase, is a regulator of inositol metabolism. Deletion of KCS1, which blocks synthesis of inositol pyrophosphates on the 5-hydroxyl of the inositol ring, causes inositol auxotrophy and decreased intracellular inositol and phosphatidylinositol. These defects are caused by a profound decrease in transcription of INO1, which encodes myo-inositol-3-phosphate synthase. Expression of genes that function in glycolysis, transcription, and protein processing is not affected in kcs1Δ. Deletion of OPI1, the INO1 transcription repressor, does not fully rescue INO1 expression in kcs1Δ. Both the inositol pyrophosphate kinase and the basic leucine zipper domains of KCS1 are required for INO1 expression. Kcs1 is regulated in response to inositol, as Kcs1 protein levels are increased in response to inositol depletion. The Kcs1-catalyzed production of inositol pyrophosphates from inositol pentakisphosphate but not inositol hexakisphosphate is indispensable for optimal INO1 transcription. We conclude that INO1 transcription is fine-tuned by the synthesis of inositol pyrophosphates, and we propose a model in which modulation of Kcs1 controls INO1 transcription by regulating synthesis of inositol pyrophosphates.

Indexed as

Gene DeletionGene Expression Regulation, EnzymologicGene Expression Regulation, FungalInositol PhosphatesMyo-Inositol-1-Phosphate SynthasePhosphotransferases (Phosphate Group Acceptor)Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticINO1 protein, S cerevisiaeInositol PhosphatesKCS1 protein, S cerevisiaeMyo-Inositol-1-Phosphate SynthasePhosphotransferases (Phosphate Group Acceptor)Saccharomyces cerevisiae ProteinsInositol 1Inositol PhosphatesInositol PhospholipidInositol PyrophosphatePhosphatidylinositolYeast Genetics

Identifiers

PMID23824185
PMCPMC3750184
OpenAlexW2042505627

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.