Evidence map›Paper›PMID 23824184›Full record

ArticleThe Journal of biological chemistry2013

Bile acid signal-induced phosphorylation of small heterodimer partner by protein kinase Cζ is critical for epigenomic regulation of liver metabolic genes.

Sunmi Seok, Deepthi Kanamaluru, Zhen Xiao, Daniel Ryerson, Sung-E Choi, Kelly Suino-Powell, H Eric Xu, Timothy D Veenstra, Jongsook Kim Kemper

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Sunmi SeokDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
Deepthi Kanamaluru
Zhen Xiao
Daniel Ryerson
Sung-E Choi
Kelly Suino-Powell
H Eric Xu
Timothy D Veenstra
Jongsook Kim Kemper
University of Illinois Urbana-Champaign · USScience Applications International Corporation (United States) · USVan Andel Institute · US

Funding

Regulation of Cholesterol Catabolism by Bile AcidsR01DK062777 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2003 to 2021
$5.8M
Structural Genomics of Orphan Nuclear ReceptorsR01DK071662 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2005 to 2017
$5.1M
Coordination of gut-liver bile acid signaling by FXRR01DK095842 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2012 to 2021
$3.0M
Structure and Functions of Steroid Hormone ReceptorsR01DK066202 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2006 to 2010
$2.0M
Regulation of cholesterol catabolism by bile acidsR56DK062777 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2008 to 2008
$192k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENIDDK NIH HHS DK62777NIDDK NIH HHS DK66202NIDDK NIH HHS DK71662NIDDK NIH HHS DK95842NIDDK NIH HHS R01 DK062777NIDDK NIH HHS R01 DK066202NIDDK NIH HHS R01 DK071662NIDDK NIH HHS R01 DK095842NIDDK NIH HHS R56 DK062777
6 · The paper itself

Abstract

Bile acids (BAs) are recently recognized key signaling molecules that control integrative metabolism and energy expenditure. BAs activate multiple signaling pathways, including those of nuclear receptors, primarily farnesoid X receptor (FXR), membrane BA receptors, and FXR-induced FGF19 to regulate the fed-state metabolism. Small heterodimer partner (SHP) has been implicated as a key mediator of these BA signaling pathways by recruitment of chromatin modifying proteins, but the key question of how SHP transduces BA signaling into repressive histone modifications at liver metabolic genes remains unknown. Here we show that protein kinase Cζ (PKCζ) is activated by BA or FGF19 and phosphorylates SHP at Thr-55 and that Thr-55 phosphorylation is critical for the epigenomic coordinator functions of SHP. PKCζ is coimmunopreciptitated with SHP and both are recruited to SHP target genes after bile acid or FGF19 treatment. Activated phosphorylated PKCζ and phosphorylated SHP are predominantly located in the nucleus after FGF19 treatment. Phosphorylation at Thr-55 is required for subsequent methylation at Arg-57, a naturally occurring mutation site in metabolic syndrome patients. Thr-55 phosphorylation increases interaction of SHP with chromatin modifiers and their occupancy at selective BA-responsive genes. This molecular cascade leads to repressive modifications of histones at metabolic target genes, and consequently, decreased BA pools and hepatic triglyceride levels. Remarkably, mutation of Thr-55 attenuates these SHP-mediated epigenomic and metabolic effects. This study identifies PKCζ as a novel key upstream regulator of BA-regulated SHP function, revealing the role of Thr-55 phosphorylation in epigenomic regulation of liver metabolism.

Indexed as

AnimalsBile Acids and SaltsEpigenesis, GeneticFibroblast Growth FactorsHep G2 CellsHumansLiverMaleMethylationMiceMice, Inbred BALB CMutationPhosphorylationProtein Kinase C-epsilonReceptor, Farnesoid X-ActivatedReceptors, Cytoplasmic and NuclearBile Acids and SaltsFGF19 protein, humanfibroblast growth factor 15, mouseFibroblast Growth Factorsnuclear receptor subfamily 0, group B, member 2Protein Kinase C-epsilonReceptor, Farnesoid X-ActivatedReceptors, Cytoplasmic and NuclearBile AcidCDCACyp7a1EpigenomicsFGF19Fibroblast Growth Factor (FGF)Histone ModificationLiver MetabolismPost-translational Modification

Identifiers

PMID23824184
PMCPMC3743497
OpenAlexW2073719082

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.