Evidence map›Paper›PMID 23824183›Full record

ArticleThe Journal of biological chemistry2013

Insight into pleiotropic drug resistance ATP-binding cassette pump drug transport through mutagenesis of Cdr1p transmembrane domains.

Manpreet Kaur Rawal, Mohammad Firoz Khan, Khyati Kapoor, Neha Goyal, Sobhan Sen, Ajay Kumar Saxena, Andrew M Lynn, Joel D A Tyndall, Brian C Monk, Richard D Cannon and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. FK506 Resistance ofAntimicrobial agents and chemotherapy · 2019
    Article
  11. Article
  12. Azole resistance in aThe Journal of biological chemistry · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Efflux pump proteins in antifungal resistance.Frontiers in pharmacology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Manpreet Kaur RawalSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Mohammad Firoz Khan
Khyati Kapoor
Neha Goyal
Sobhan Sen
Ajay Kumar Saxena
Andrew M Lynn
Joel D A Tyndall
Brian C Monk
Richard D Cannon
Sneha Sudha Komath
Rajendra Prasad
Jawaharlal Nehru University · INUniversity of Otago · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fungal ATP-binding cassette (ABC) transporter Cdr1 protein (Cdr1p), responsible for clinically significant drug resistance, is composed of two transmembrane domains (TMDs) and two nucleotide binding domains (NBDs). We have probed the nature of the drug binding pocket by performing systematic mutagenesis of the primary sequences of the 12 transmembrane segments (TMSs) found in the TMDs. All mutated proteins were expressed equally well and localized properly at the plasma membrane in the heterologous host Saccharomyces cerevisiae, but some variants differed significantly in efflux activity, substrate specificity, and coupled ATPase activity. Replacement of the majority of the amino acid residues with alanine or glycine yielded neutral mutations, but about 42% of the variants lost resistance to drug efflux substrates completely or selectively. A predicted three-dimensional homology model shows that all the TMSs, apart from TMS4 and TMS10, interact directly with the drug-binding cavity in both the open and closed Cdr1p conformations. However, TMS4 and TMS10 mutations can also induce total or selective drug susceptibility. Functional data and homology modeling assisted identification of critical amino acids within a drug-binding cavity that, upon mutation, abolished resistance to all drugs tested singly or in combinations. The open and closed Cdr1p models enabled the identification of amino acid residues that bordered a drug-binding cavity dominated by hydrophobic residues. The disposition of TMD residues with differential effects on drug binding and transport are consistent with a large polyspecific drug binding pocket in this yeast multidrug transporter.

Indexed as

Amino Acid SubstitutionBiological Transport, ActiveCandida albicansDrug Resistance, FungalFungal ProteinsMembrane Transport ProteinsMutation, MissenseProtein Structure, SecondaryProtein Structure, TertiarySaccharomyces cerevisiaeCDR1 protein, Candida albicansFungal ProteinsMembrane Transport ProteinsABC TransporterATPasesAzolesDrug ResistanceFungal Multidrug ResistanceMembrane ProteinsMultidrug TransportersPleiotropic Drug ResistanceSubstrate SpecificityTransmembrane Domains

Identifiers

PMID23824183
PMCPMC3750147
OpenAlexW2018215572

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.