Evidence map›Paper›PMID 23821607›Full record

ArticleMolecular biology and evolution2013

Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: functional implications.

Eduardo Tarazona-Santos, Moara Machado, Wagner C S Magalhães, Renee Chen, Fernanda Lyon, Laurie Burdett, Andrew Crenshaw, Cristina Fabbri, Latife Pereira, Laelia Pinto and 4 more

Open access · greenAbstract read
In one paragraph

Article in Molecular biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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  13. NADPH Oxidase Inhibition in Fibrotic Pathologies.Antioxidants & redox signaling · 2020
    Article
  14. Perianal Disease and Granulomas: Think Out of the Box….GE Portuguese journal of gastroenterology · 2020
    Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Eduardo Tarazona-SantosLaboratory of Translational Genomics of the Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Gaithersburg, MD, USA. edutars@icb.ufmg.br
Moara Machado
Wagner C S Magalhães
Renee Chen
Fernanda Lyon
Laurie Burdett
Andrew Crenshaw
Cristina Fabbri
Latife Pereira
Laelia Pinto
Rodrigo A F Redondo
Ben Sestanovich
Meredith Yeager
Stephen J Chanock
Universidade Federal de Minas Gerais · BRNational Cancer Institute · USNational Institutes of Health · USInstitute of Science and Technology Austria · ATScience Applications International Corporation (United States) · USUniversity of Bologna · IT

Funding

Genetic susceptibility to gastric cancer in Latin AmericaR01TW007894 · FIC · UNIVERSIDADE FEDERAL DE MINAS GERAIS · PI TARAZONA-SANTOS, EDUARDO M · 2007 to 2011
$253k
FIC NIH HHS 1R01TW007894FIC NIH HHS R01 TW007894Intramural NIH HHS
6 · The paper itself

Abstract

The phagocyte NADPH oxidase catalyzes the reduction of O2 to reactive oxygen species with microbicidal activity. It is composed of two membrane-spanning subunits, gp91-phox and p22-phox (encoded by CYBB and CYBA, respectively), and three cytoplasmic subunits, p40-phox, p47-phox, and p67-phox (encoded by NCF4, NCF1, and NCF2, respectively). Mutations in any of these genes can result in chronic granulomatous disease, a primary immunodeficiency characterized by recurrent infections. Using evolutionary mapping, we determined that episodes of adaptive natural selection have shaped the extracellular portion of gp91-phox during the evolution of mammals, which suggests that this region may have a function in host-pathogen interactions. On the basis of a resequencing analysis of approximately 35 kb of CYBB, CYBA, NCF2, and NCF4 in 102 ethnically diverse individuals (24 of African ancestry, 31 of European ancestry, 24 of Asian/Oceanians, and 23 US Hispanics), we show that the pattern of CYBA diversity is compatible with balancing natural selection, perhaps mediated by catalase-positive pathogens. NCF2 in Asian populations shows a pattern of diversity characterized by a differentiated haplotype structure. Our study provides insight into the role of pathogen-driven natural selection in an innate immune pathway and sheds light on the role of CYBA in endothelial, nonphagocytic NADPH oxidases, which are relevant in the pathogenesis of cardiovascular and other complex diseases.

Indexed as

Amino Acid SequenceAnimalsAsian PeopleBacteriaBacterial InfectionsBacterial ProteinsBlack PeopleCatalaseEvolution, MolecularGenetic VariationGranulomatous Disease, ChronicHaplotypesHost-Pathogen InteractionsHumansMembrane GlycoproteinsMolecular Sequence DataBacterial ProteinsCatalaseCYBA protein, humanCYBB protein, humanMembrane GlycoproteinsNADPH Oxidase 2NADPH OxidasesNCF2 protein, humanNCF4 protein, humanchronic granulomatous diseaseimmunogeneticsinnate immunity

Identifiers

PMID23821607
PMCPMC3748357
OpenAlexW2119202998

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.