Evidence map›Paper›PMID 23820885›Full record

ArticleMolecules and cells2013

Structure of the catalytic domain of protein tyrosine phosphatase sigma in the sulfenic acid form.

Tae Jin Jeon, Pham Ngoc Chien, Ha-Jung Chun, Seong Eon Ryu

Abstract read
In one paragraph

Article in Molecules and cells, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tae Jin JeonDepartment of Bioengineering, College of Engineering, Hanyang University, Seoul, 133-070, Korea.
Pham Ngoc Chien
Ha-Jung Chun
Seong Eon Ryu
Hanyang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein tyrosine phosphatase sigma (PTPσ) plays a vital role in neural development. The extracellular domain of PTPσ binds to various proteoglycans, which control the activity of 2 intracellular PTP domains (D1 and D2). To understand the regulatory mechanism of PTPσ, we carried out structural and biochemical analyses of PTPσ D1D2. In the crystal structure analysis of a mutant form of D1D2 of PTPσ, we unexpectedly found that the catalytic cysteine of D1 is oxidized to cysteine sulfenic acid, while that of D2 remained in its reduced form, suggesting that D1 is more sensitive to oxidation than D2. This finding contrasts previous observations on PTPα. The cysteine sulfenic acid of D1 was further confirmed by immunoblot and mass spectrometric analyses. The stabilization of the cysteine sulfenic acid in the active site of PTP suggests that the formation of cysteine sulfenic acid may function as a stable intermediate during the redox-regulation of PTPs.

Indexed as

Catalytic DomainAmino Acid SequenceCrystallography, X-RayCysteineImmunoblottingModels, MolecularMolecular Sequence DataMutant ProteinsReceptor-Like Protein Tyrosine Phosphatases, Class 2SolutionsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStatic ElectricitySulfenic AcidsCysteinecysteinesulfenic acidMutant ProteinsReceptor-Like Protein Tyrosine Phosphatases, Class 2SolutionsSulfenic Acids

Identifiers

PMID23820885
PMCPMC3887927
OpenAlexW2075823563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.