Evidence map›Paper›PMID 23820583›Full record

ArticleInternational journal of molecular sciences2013

The organization of the quorum sensing luxI/R family genes in Burkholderia.

Kumari Sonal Choudhary, Sanjarbek Hudaiberdiev, Zsolt Gelencsér, Bruna Gonçalves Coutinho, Vittorio Venturi, Sándor Pongor

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

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  11. Potential of theFrontiers in cellular and infection microbiology · 2019
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  12. The Pan African medical journal · 2019
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  13. TwoJournal of bacteriology · 2018
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  16. Article
  17. Article
  18. Article
  19. Census of solo LuxR genes in prokaryotic genomes.Frontiers in cellular and infection microbiology · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Kumari Sonal ChoudharyInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Padriciano 99, Trieste 32149, Italy. venturi@icgeb.org.
Sanjarbek Hudaiberdiev
Zsolt Gelencsér
Bruna Gonçalves Coutinho
Vittorio Venturi
Sándor Pongor
International Centre for Genetic Engineering and Biotechnology · ITPázmány Péter Catholic University · HUMinistério da Saúde · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the Burkholderia genus of Proteobacteria are capable of living freely in the environment and can also colonize human, animal and plant hosts. Certain members are considered to be clinically important from both medical and veterinary perspectives and furthermore may be important modulators of the rhizosphere. Quorum sensing via N-acyl homoserine lactone signals (AHL QS) is present in almost all Burkholderia species and is thought to play important roles in lifestyle changes such as colonization and niche invasion. Here we present a census of AHL QS genes retrieved from public databases and indicate that the local arrangement (topology) of QS genes, their location within chromosomes and their gene neighborhoods show characteristic patterns that differ between the known Burkholderia clades. In sequence phylogenies, AHL QS genes seem to cluster according to the local gene topology rather than according to the species, which suggests that the basic topology types were present prior to the appearance of current Burkholderia species. The data are available at http://net.icgeb.org/burkholderia/.

Indexed as

Genes, BacterialAnimalsBacterial ProteinsBurkholderiaHumansQuorum SensingRepressor ProteinsTrans-ActivatorsTranscription FactorsBacterial ProteinsLuxI protein, BacteriaLuxR autoinducer binding proteinsRepressor ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID23820583
PMCPMC3742214
OpenAlexW2168427445

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.