Evidence map›Paper›PMID 23820479›Full record

ArticleEuropean journal of human genetics : EJHG2014

THEMIS and PTPRK in celiac intestinal mucosa: coexpression in disease and after in vitro gliadin challenge.

Constanza Bondar, Leticia Plaza-Izurieta, Nora Fernandez-Jimenez, Iñaki Irastorza, Sebo Withoff, Cisca Wijmenga, Fernando Chirdo, Jose Ramon Bilbao, CEGEC

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. A mutation inbioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. MAGI2 Gene Region and Celiac Disease.Frontiers in nutrition · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Therapeutic approaches for celiac disease.Best practice & research. Clinical gastroenterology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Constanza Bondar
Leticia Plaza-Izurieta
Nora Fernandez-Jimenez
Iñaki Irastorza
Sebo Withoff
Cisca Wijmenga
Fernando Chirdo
Jose Ramon Bilbao
CEGEC
University of the Basque Country · ESUniversity Medical Center Groningen · NLCentro de Investigación Biomédica en Red Diabetes y Enfermedades Metabólicas Asociadas · ESUniversidad Nacional de La Plata · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Celiac disease (CD) is an immune mediated, polygenic disorder, where HLA-DQ2/DQ8 alleles contribute around 35% to genetic risk, but several other genes are also involved. Genome-wide association studies (GWASs) and the more recent immunochip genotyping projects have fine-mapped 39 regions of genetic susceptibility to the disease, most of which harbor candidate genes that could participate in this disease process. We focused our attention to the GWAS peak on chr6: 127.99-128.38 Mb, a region including two genes, thymocyte-expressed molecule involved in selection (THEMIS) and protein tyrosine phosphatase, receptor type, kappa (PTPRK), both of which have immune-related functions. The aim of this work was to evaluate the expression levels of these two genes in duodenal mucosa of active and treated CD patients and in controls, and to determine whether SNPs (rs802734, rs55743914, rs72975916, rs10484718 and rs9491896) associated with CD have any influence on gene expression. THEMIS showed higher expression in active CD compared with treated patients and controls, whereas PTPRK showed lower expression. Our study confirmed the association of this region with CD in our population, but only the genotype of rs802734 showed some influence in the expression of THEMIS. On the other hand, we found a significant positive correlation between THEMIS and PTPRK mRNA levels in CD patients but not in controls. Our results suggest a possible role for both candidate genes in CD pathogenesis and the existence of complex, regulatory relationships that reside in the vast non-coding, functional intergenic regions of the genome. Further investigation is needed to clarify the impact of the disease-associated SNPs on gene function.

Indexed as

Case-Control StudiesCeliac DiseaseCells, CulturedChild, PreschoolChromosomes, Human, Pair 6DuodenumFemaleGliadinHumansInfantIntestinal MucosaIntracellular Signaling Peptides and ProteinsMalePolymorphism, Single NucleotideReceptor-Like Protein Tyrosine Phosphatases, Class 2RNA, MessengerGliadinIntracellular Signaling Peptides and ProteinsPTPRK protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 2RNA, Messengerthymocyte-expressed molecule involved in selection, human

Identifiers

PMID23820479
PMCPMC3925264
OpenAlexW2148265132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.