Evidence map›Paper›PMID 23820297›Full record

ArticleAutophagy2013

Autophagy receptor CALCOCO2/NDP52 takes center stage in Crohn disease.

Andreas Till, Simone Lipinski, David Ellinghaus, Gabriele Mayr, Suresh Subramani, Philip Rosenstiel, Andre Franke

Open access · bronzeAbstract readComment
In one paragraph

Article in Autophagy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 31 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. Article
  4. Review
  5. Article
  6. Article
  7. Macroautophagy in CNS health and disease.Nature reviews. Neuroscience · 2022
    Review
  8. Article
  9. Moments in autophagy and disease: Past and present.Molecular aspects of medicine · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. The Role of Autophagy and Autophagy Receptor NDP52 in Microbial Infections.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Review
  16. Selective Autophagy and Xenophagy in Infection and Disease.Frontiers in cell and developmental biology · 2018
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Andreas TillInstitute of Clinical Molecular Biology; Christian-Albrechts-University of Kiel; Kiel, Germany; Subramani Lab and San Diego Center for Systems Biology; University of California San Diego; La Jolla, CA USA.
Simone Lipinski
David Ellinghaus
Gabriele Mayr
Suresh Subramani
Philip Rosenstiel
Andre Franke
Kiel University · DECenter for Systems Biology · USUniversity of California, San Diego · US

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Mechanisms Involved in PexophagyR01GM069373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2006 to 2013
$2.3M
NIGMS NIH HHS GM069373NIGMS NIH HHS GM085764NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM069373
6 · The paper itself

Abstract

To advance understanding of the complex genetics of Crohn disease (CD) we sequenced 42 whole exomes of patients with CD and five healthy control individuals, resulting in identification of a missense mutation in the autophagy receptor calcium binding and coiled-coil domain 2 (CALCOCO2/NDP52) gene. Protein domain modeling and functional studies highlight the potential role of this mutation in controlling NFKB signaling downstream of toll-like receptor (TLR) pathways. We summarize our recent findings and discuss the role of autophagy as a major modulator of proinflammatory signaling in the context of chronic inflammation.

Indexed as

Colitis, UlcerativeCrohn DiseaseFemaleHumansMaleNuclear ProteinsRepressor ProteinsNuclear ProteinsRepressor ProteinsadaptophagyautophagyCALCOCO2Crohn diseaseinflammationNDP52NF-kappaBtoll-like receptor

Identifiers

PMID23820297
PMCPMC3748200
OpenAlexW2067458397

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.