Evidence map›Paper›PMID 23819503›Full record

ArticleBMC medical genomics2013

Altering physiological networks using drugs: steps towards personalized physiology.

Adam D Grossman, Mitchell J Cohen, Geoffrey T Manley, Atul J Butte

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Adam D GrossmanDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Mitchell J Cohen
Geoffrey T Manley
Atul J Butte
Stanford University · USUniversity of California, San Francisco · US

Funding

Repositioning drugs for the treatment of small cell lung cancerR01GM079719 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUTTE, ATUL J · 2006 to 2015
$4.4M
Role of Aquaporin-4 Water Channels in Cerebral EdemaR01NS050173 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MANLEY, GEOFFREY T · 2005 to 2009
$1.5M
Mechanism of Traumatic CoagulopathyK08GM085689 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COHEN, MITCHELL · 2008 to 2012
$594k
NIGMS NIH HHS K08 GM085689NIGMS NIH HHS R01 GM079719NINDS NIH HHS R01 NS050173PHS HHS R49/CCR903697
6 · The paper itself

Abstract

backgroundThe rise of personalized medicine has reminded us that each patient must be treated as an individual. One factor in making treatment decisions is the physiological state of each patient, but definitions of relevant states and methods to visualize state-related physiologic changes are scarce. We constructed correlation networks from physiologic data to demonstrate changes associated with pressor use in the intensive care unit.

methodsWe collected 29 physiological variables at one-minute intervals from nineteen trauma patients in the intensive care unit of an academic hospital and grouped each minute of data as receiving or not receiving pressors. For each group we constructed Spearman correlation networks of pairs of physiologic variables. To visualize drug-associated changes we split the networks into three components: an unchanging network, a network of connections with changing correlation sign, and a network of connections only present in one group.

resultsOut of a possible 406 connections between the 29 physiological measures, 64, 39, and 48 were present in each of the three component networks. The static network confirms expected physiological relationships while the network of associations with changed correlation sign suggests putative changes due to the drugs. The network of associations present only with pressors suggests new relationships that could be worthy of study.

conclusionsWe demonstrated that visualizing physiological relationships using correlation networks provides insight into underlying physiologic states while also showing that many of these relationships change when the state is defined by the presence of drugs. This method applied to targeted experiments could change the way critical care patients are monitored and treated.

Indexed as

Computational BiologyMonitoring, PhysiologicPrecision MedicineAdolescentAdultAgedFemaleGene Regulatory NetworksHumansIntensive Care UnitsMaleMiddle AgedModels, StatisticalPharmaceutical PreparationsWounds and InjuriesYoung AdultPharmaceutical Preparations

Identifiers

PMID23819503
PMCPMC3654899
OpenAlexW2110921590

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.