Evidence map›Paper›PMID 23818957›Full record

ArticlePloS one2013

Eubacterial SpoVG homologs constitute a new family of site-specific DNA-binding proteins.

Brandon L Jutras, Alicia M Chenail, Christi L Rowland, Dustin Carroll, M Clarke Miller, Tomasz Bykowski, Brian Stevenson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Virulence Regulation inMicroorganisms · 2025
    Review
  5. Article
  6. The genesApplied and environmental microbiology · 2024
    Article
  7. GlutamateJournal of bacteriology · 2024
    Article
  8. bioRxiv : the preprint server for biology · 2024
    Article
  9. Review
  10. Quantitative analyses of interactions between SpoVG and RNA/DNA.Biochemical and biophysical research communications · 2023
    Article
  11. Article
  12. Quantitative analyses of interactions between SpoVG and RNA/DNA.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Gene Regulation and Transcriptomics.Current issues in molecular biology · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Brandon L JutrasDepartment of Microbiology, Immunology, and Molecular Genetics, University of Kentucky College of Medicine, Lexington, Kentucky, USA.
Alicia M Chenail
Christi L Rowland
Dustin Carroll
M Clarke Miller
Tomasz Bykowski
Brian Stevenson
University of Kentucky · USUniversity of Louisville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A site-specific DNA-binding protein was purified from Borrelia burgdorferi cytoplasmic extracts, and determined to be a member of the highly conserved SpoVG family. This is the first time a function has been attributed to any of these ubiquitous bacterial proteins. Further investigations into SpoVG orthologues indicated that the Staphylococcus aureus protein also binds DNA, but interacts preferentially with a distinct nucleic acid sequence. Site-directed mutagenesis and domain swapping between the S. aureus and B. burgdorferi proteins identified that a 6-residue stretch of the SpoVG α-helix contributes to DNA sequence specificity. Two additional, highly conserved amino acid residues on an adjacent β-sheet are essential for DNA-binding, apparently by contacts with the DNA phosphate backbone. Results of these studies thus identified a novel family of bacterial DNA-binding proteins, developed a model of SpoVG-DNA interactions, and provide direction for future functional studies on these wide-spread proteins.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding, CompetitiveBinding SitesBorrelia burgdorferiDNA, BacterialDNA-Binding ProteinsEubacteriumMolecular Sequence DataMutagenesis, Site-DirectedNucleotide MotifsProtein BindingProtein MultimerizationProtein Structure, SecondarySequence Homology, Amino AcidSpecies SpecificityBacterial ProteinsDNA, BacterialDNA-Binding Proteins

Identifiers

PMID23818957
PMCPMC3688583
OpenAlexW2162269898

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.