Evidence map›Paper›PMID 23818865›Full record

ArticlePLoS genetics2013

Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity.

Mark R Davies, Sarah E Broadbent, Simon R Harris, Nicholas R Thomson, Marjan W van der Woude

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 98 citations in OpenAlex.

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  12. Discovery of novel treponemes associated with pododermatitis in elk (Applied and environmental microbiology · 2024
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  15. Frontiers in cellular and infection microbiology · 2024
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  19. Article
  20. Genetic Mining of Newly Isolated Salmophages for Phage Therapy.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mark R DaviesCentre for Immunology and Infection, Hull York Medical School and the Department of Biology, University of York, York, UK.
Sarah E Broadbent
Simon R Harris
Nicholas R Thomson
Marjan W van der Woude
Hull York Medical School · GBWellcome Sanger Institute · GB

Funding

Wellcome TrustWellcome Trust 076964Wellcome Trust 080086MA
6 · The paper itself

Abstract

The immunodominant lipopolysaccharide is a key antigenic factor for Gram-negative pathogens such as salmonellae where it plays key roles in host adaptation, virulence, immune evasion, and persistence. Variation in the lipopolysaccharide is also the major differentiating factor that is used to classify Salmonella into over 2600 serovars as part of the Kaufmann-White scheme. While lipopolysaccharide diversity is generally associated with sequence variation in the lipopolysaccharide biosynthesis operon, extraneous genetic factors such as those encoded by the glucosyltransferase (gtr) operons provide further structural heterogeneity by adding additional sugars onto the O-antigen component of the lipopolysaccharide. Here we identify and examine the O-antigen modifying glucosyltransferase genes from the genomes of Salmonella enterica and Salmonella bongori serovars. We show that Salmonella generally carries between 1 and 4 gtr operons that we have classified into 10 families on the basis of gtrC sequence with apparent O-antigen modification detected for five of these families. The gtr operons localize to bacteriophage-associated genomic regions and exhibit a dynamic evolutionary history driven by recombination and gene shuffling events leading to new gene combinations. Furthermore, evidence of Dam- and OxyR-dependent phase variation of gtr gene expression was identified within eight gtr families. Thus, as O-antigen modification generates significant intra- and inter-strain phenotypic diversity, gtr-mediated modification is fundamental in assessing Salmonella strain variability. This will inform appropriate vaccine and diagnostic approaches, in addition to contributing to our understanding of host-pathogen interactions.

Indexed as

Antigens, BacterialGenetic VariationGene Transfer, HorizontalGenome, BacterialGlycosyltransferasesGram-Negative BacteriaHost-Pathogen InteractionsHumansLipopolysaccharidesSalmonella entericaAntigens, BacterialGlycosyltransferasesLipopolysaccharides

Identifiers

PMID23818865
PMCPMC3688519
OpenAlexW2024187943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.