Evidence map›Paper›PMID 23818174›Full record

ArticleThe Journal of comparative neurology2013

Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities.

Chun-Chun Chen, Candace M Winkler, Andreas R Pfenning, Erich D Jarvis

Open access · greenAbstract read
In one paragraph

Article in The Journal of comparative neurology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Spatial coding in the hippocampus and hyperpallium of flying owls.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Molecular architecture of the zebra finch arcopallium.The Journal of comparative neurology · 2019
    Article
  9. Article
  10. Molecular anatomy of the alligator dorsal telencephalon.The Journal of comparative neurology · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Brain evolution by brain pathway duplication.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  18. Convergent evolution of complex brains and high intelligence.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  19. Article
  20. On the hodological criterion for homology.Frontiers in neuroscience · 2015
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chun-Chun ChenDepartment of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina, 27710.
Candace M Winkler
Andreas R Pfenning
Erich D Jarvis
Duke University Hospital · USHoward Hughes Medical Institute · US

Funding

Computational Biology and Bioinformatics Training ProgramT32GM071340 · NIGMS · DUKE UNIVERSITY · PI MAGWENE, PAUL MITAARI · 2005 to 2020
$3.3M
Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM071340
6 · The paper itself

Abstract

In our companion study (Jarvis et al. [2013] J Comp Neurol. doi: 10.1002/cne.23404) we used quantitative brain molecular profiling to discover that distinct subdivisions in the avian pallium above and below the ventricle and the associated mesopallium lamina have similar molecular profiles, leading to a hypothesis that they may form as continuous subdivisions around the lateral ventricle. To explore this hypothesis, here we profiled the expression of 16 genes at eight developmental stages. The genes included those that define brain subdivisions in the adult and some that are also involved in brain development. We found that phyletic hierarchical cluster and linear regression network analyses of gene expression profiles implicated single and mixed ancestry of these brain regions at early embryonic stages. Most gene expression-defined pallial subdivisions began as one ventral or dorsal domain that later formed specific folds around the lateral ventricle. Subsequently a clear ventricle boundary formed, partitioning them into dorsal and ventral pallial subdivisions surrounding the mesopallium lamina. These subdivisions each included two parts of the mesopallium, the nidopallium and hyperpallium, and the arcopallium and hippocampus, respectively. Each subdivision expression profile had a different temporal order of appearance, similar in timing to the order of analogous cell types of the mammalian cortex. Furthermore, like the mammalian pallium, expression in the ventral pallial subdivisions became distinct during prehatch development, whereas the dorsal portions did so during posthatch development. These findings support the continuum hypothesis of avian brain subdivision development around the ventricle and influence hypotheses on homologies of the avian pallium with other vertebrates.

Indexed as

TelencephalonAge FactorsAnimalsAnimals, NewbornCell CountEmbryo, NonmammalianFemaleGene ExpressionGene Expression Regulation, DevelopmentalGene Regulatory NetworksMaleSongbirdsanatomical gene expression networksbrain evolutionCOUP-TF2embryoFOXP1in situ hybridizationLHX9palliumPPAPPDC1AROR-βsubpalliumzebra finch

Identifiers

PMID23818174
PMCPMC3863995
OpenAlexW2116278571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.