Evidence map›Paper›PMID 23818097›Full record

ArticleProtein science : a publication of the Protein Society2013

Ionic strength-dependent conformations of a ubiquitin-like small archaeal modifier protein (SAMP1) from Haloferax volcanii.

Kaiqin Ye, Shanhui Liao, Wen Zhang, Kai Fan, Xuecheng Zhang, Jiahai Zhang, Chao Xu, Xiaoming Tu

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Prokaryotic ubiquitin-like protein modification.Annual review of microbiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Kaiqin YeHefei National Laboratory for Physical Sciences at Microscale, School of Life Science, University of Science and Technology of China, Hefei, Anhui, 230026, People's Republic of China.
Shanhui Liao
Wen Zhang
Kai Fan
Xuecheng Zhang
Jiahai Zhang
Chao Xu
Xiaoming Tu
Hefei National Center for Physical Sciences at Nanoscale · CNUniversity of Science and Technology of China · CNAnhui University · CNUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic ubiquitin and ubiquitin-like systems play crucial roles in various cellular biological processes. In this work, we determined the solution structure of SAMP1 from Haloferax volcanii by NMR spectroscopy. Under low ionic conditions, SAMP1 presented two distinct conformations, one folded β-grasp and the other disordered. Interestingly, SAMP1 underwent a conformational conversion from disorder to order with ion concentration increasing, indicating that the ordered conformation is the functional form of SAMP1 under the physiological condition of H. volcanii. Furthermore, SAMP1 could interact with proteasome-activating nucleotidase B, supposing a potential role of SAMP1 in the protein degradation pathway mediated by proteasome.

Indexed as

Amino Acid SequenceArchaeal ProteinsHaloferax volcaniiModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularOsmolar ConcentrationProteasome Endopeptidase ComplexProtein BindingProtein ConformationSequence AlignmentSodium ChlorideUbiquitinArchaeal ProteinsProteasome Endopeptidase ComplexSodium ChlorideUbiquitinHaloferax volcaniiNMRprotein foldingSAMP1ubiquitin-like protein

Identifiers

PMID23818097
PMCPMC3776330
OpenAlexW2134367626

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.