Evidence map›Paper›PMID 23817572›Full record

ArticleNature genetics2013

Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma.

David T W Jones, Barbara Hutter, Natalie Jäger, Andrey Korshunov, Marcel Kool, Hans-Jörg Warnatz, Thomas Zichner, Sally R Lambert, Marina Ryzhova, Dong Anh Khuong Quang and 66 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 462 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
462citing papers in PubMed, 3 pooled it
31.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

462 citing papers in PubMed, 3 syntheses or guidelines pooled it, 826 citations in OpenAlex.

  1. Molecular features in gangliogliomas: a systematic review.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2026
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402 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

76 authors at 20 institutions in 6 countries.

David T W JonesDivision of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Barbara Hutter
Natalie Jäger
Andrey Korshunov
Marcel Kool
Hans-Jörg Warnatz
Thomas Zichner
Sally R Lambert
Marina Ryzhova
Dong Anh Khuong Quang
Adam M Fontebasso
Adrian M Stütz
Sonja Hutter
Marc Zuckermann
Dominik Sturm
Jan Gronych
Bärbel Lasitschka
Sabine Schmidt
Huriye Seker-Cin
Hendrik Witt
Marc Sultan
Meryem Ralser
Paul A Northcott
Volker Hovestadt
Sebastian Bender
Elke Pfaff
Sebastian Stark
Damien Faury
Jeremy Schwartzentruber
Jacek Majewski
Ursula D Weber
Marc Zapatka
Benjamin Raeder
Matthias Schlesner
Catherine L Worth
Cynthia C Bartholomae
Christof von Kalle
Charles D Imbusch
Sylwester Radomski
Chris Lawerenz
Peter van Sluis
Jan Koster
Richard Volckmann
Rogier Versteeg
Hans Lehrach
Camelia Monoranu
Beate Winkler
Andreas Unterberg
Christel Herold-Mende
Till Milde
Andreas E Kulozik
Martin Ebinger
Martin U Schuhmann
Yoon-Jae Cho
Scott L Pomeroy
Andreas von Deimling
Olaf Witt
Michael D Taylor
Stephan Wolf
Matthias A Karajannis
Charles G Eberhart
Wolfram Scheurlen
Martin Hasselblatt
Keith L Ligon
Mark W Kieran
Jan O Korbel
Marie-Laure Yaspo
Benedikt Brors
Jörg Felsberg
Guido Reifenberger
V Peter Collins
Nada Jabado
Roland Eils
Peter Lichter
Stefan M Pfister
International Cancer Genome Consortium PedBrain Tumor Project
German Cancer Research Center · DEHeidelberg University · DEMcGill University · CAMax Planck Society · DEUniversity of Amsterdam · NLHarvard University Press · USHeinrich Heine University Düsseldorf · DEMax Planck Innovation · DEUniversity of Cambridge · GBUniversity of Tübingen · DEUniversity of Würzburg · DEAmsterdam University of the Arts · NLBoston Children's Museum · USBroad Institute · USJohns Hopkins University · USNew York University · USRussian Academy of Sciences · RUStanford University · USUniversity of Münster · DEUniversity of Toronto · CA

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI CHEN, CHINFEI · 1985 to 2015
$26.2M
Therapeutic Opportunities for Pediatric AstrocytomaP01CA142536 · NCI · DANA-FARBER CANCER INST · PI SEGAL, ROSALIND A. · 2011 to 2015
$7.9M
Genomic-wide Kinase Sequencing of Pediatric Brain TumorsR01CA105607 · NCI · DANA-FARBER CANCER INSTITUTE · PI ROBERTS, THOMAS M · 2004 to 2008
$3.4M
CIHRNCI NIH HHS P01 CA142536NCI NIH HHS R01 CA105607NCI NIH HHS R01CA105607NICHD NIH HHS P30 HD018655NICHD NIH HHS P30HD018655
6 · The paper itself

Abstract

Pilocytic astrocytoma, the most common childhood brain tumor, is typically associated with mitogen-activated protein kinase (MAPK) pathway alterations. Surgically inaccessible midline tumors are therapeutically challenging, showing sustained tendency for progression and often becoming a chronic disease with substantial morbidities. Here we describe whole-genome sequencing of 96 pilocytic astrocytomas, with matched RNA sequencing (n = 73), conducted by the International Cancer Genome Consortium (ICGC) PedBrain Tumor Project. We identified recurrent activating mutations in FGFR1 and PTPN11 and new NTRK2 fusion genes in non-cerebellar tumors. New BRAF-activating changes were also observed. MAPK pathway alterations affected all tumors analyzed, with no other significant mutations identified, indicating that pilocytic astrocytoma is predominantly a single-pathway disease. Notably, we identified the same FGFR1 mutations in a subset of H3F3A-mutated pediatric glioblastoma with additional alterations in the NF1 gene. Our findings thus identify new potential therapeutic targets in distinct subsets of pilocytic astrocytoma and childhood glioblastoma.

Indexed as

MutationAnimalsAstrocytomaBase SequenceBrain NeoplasmsCell LineCell Transformation, NeoplasticChromosome BreakpointsChromosomes, Human, Pair 6Chromosomes, Human, Pair 9Fibroblast Growth FactorsHumansMAP Kinase Signaling SystemMiceModels, MolecularOncogene Proteins, FusionBRAF protein, humanFibroblast Growth FactorsOncogene Proteins, FusionProto-Oncogene Proteins B-rafReceptor, Fibroblast Growth Factor, Type 1Receptor, trkB

Identifiers

PMID23817572
PMCPMC3951336
OpenAlexW2028785929

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.