Evidence map›Paper›PMID 23817569›Full record

SynthesisNature genetics2013

A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.

David A Hinds, George McMahon, Amy K Kiefer, Chuong B Do, Nicholas Eriksson, David M Evans, Beate St Pourcain, Susan M Ring, Joanna L Mountain, Uta Francke and 3 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed, 9 pooled it
17.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 9 syntheses or guidelines pooled it, 248 citations in OpenAlex.

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  8. Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis.Journal of the Association for Research in Otolaryngology : JARO · 2014
    Pooled it
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  19. New insights from genetic studies of eczema.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2023
    Article
  20. Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

David A Hinds23andMe, Inc., Mountain View, California, USA. dhinds@23andMe.com
George McMahon
Amy K Kiefer
Chuong B Do
Nicholas Eriksson
David M Evans
Beate St Pourcain
Susan M Ring
Joanna L Mountain
Uta Francke
George Davey-Smith
Nicholas J Timpson
Joyce Y Tung
23andMe (United States) · USUniversity of Bristol · GB

Funding

Genetics of Allergic Disease in a Participatory Research CohortR43HL115873 · NHLBI · 23ANDME, INC. · PI HINDS, DAVID ALAN · 2012 to 2012
$143k
Medical Research Council 74882Medical Research Council G9815508Medical Research Council MC_UU_12013/3Medical Research Council MC_UU_12013/4NHLBI NIH HHS 1R43HL115873-01NHLBI NIH HHS R43 HL115873Wellcome TrustWellcome Trust 092731
6 · The paper itself

Abstract

Allergic disease is very common and carries substantial public-health burdens. We conducted a meta-analysis of genome-wide associations with self-reported cat, dust-mite and pollen allergies in 53,862 individuals. We used generalized estimating equations to model shared and allergy-specific genetic effects. We identified 16 shared susceptibility loci with association P<5×10(-8), including 8 loci previously associated with asthma, as well as 4p14 near TLR1, TLR6 and TLR10 (rs2101521, P=5.3×10(-21)); 6p21.33 near HLA-C and MICA (rs9266772, P=3.2×10(-12)); 5p13.1 near PTGER4 (rs7720838, P=8.2×10(-11)); 2q33.1 in PLCL1 (rs10497813, P=6.1×10(-10)), 3q28 in LPP (rs9860547, P=1.2×10(-9)); 20q13.2 in NFATC2 (rs6021270, P=6.9×10(-9)), 4q27 in ADAD1 (rs17388568, P=3.9×10(-8)); and 14q21.1 near FOXA1 and TTC6 (rs1998359, P=4.8×10(-8)). We identified one locus with substantial evidence of differences in effects across allergies at 6p21.32 in the class II human leukocyte antigen (HLA) region (rs17533090, P=1.7×10(-12)), which was strongly associated with cat allergy. Our study sheds new light on the shared etiology of immune and autoimmune disease.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyAdultAgedAllergensAnimalsCatsCohort StudiesFemaleHumansHypersensitivityMaleMiddle AgedPolymorphism, Single NucleotidePyroglyphidaeAllergens

Identifiers

PMID23817569
PMCPMC3753407
OpenAlexW2045008815

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.