Evidence map›Paper›PMID 23816838›Full record

ReviewJournal of molecular biology2013

Guided by RNAs: X-inactivation as a model for lncRNA function.

John E Froberg, Lin Yang, Jeannie T Lee

Abstract readReview
In one paragraph

Review in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Puzzling out the role ofNon-coding RNA research · 2024
    Review
  6. Article
  7. Paternal impact on the developmental programming of sexual dimorphism.Frontiers in cell and developmental biology · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. lncRNAs in T lymphocytes: RNA regulation at the heart of the immune response.American journal of physiology. Cell physiology · 2021
    Review
  17. Dysregulation of lncRNA inBioMed research international · 2021
    Review
  18. Xist attenuates acute inflammatory response by female cells.Cellular and molecular life sciences : CMLS · 2021
    Article
  19. In Vivo Silencing/Overexpression of lncRNAs by CRISPR/Cas System.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  20. Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

John E FrobergHoward Hughes Medical Institute, Boston, MA 02114, USA; Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA; Department of Genetics, Harvard Medical School, Boston, MA 02114, USA.
Lin Yang
Jeannie T Lee

Funding

Regulation of X-chromosome Inactivation and Imprinting by Non-coding ElementsR37GM058839 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2012 to 2021
$4.1M
Polycomb complexes targeted to specific loci by non-coding RNA co-factorsR01GM090278 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2010 to 2017
$3.7M
NIGMS NIH HHS R01 GM090278NIGMS NIH HHS R37 GM058839
6 · The paper itself

Abstract

The recent revolution in sequencing technology has helped to reveal a large transcriptome of long non-coding RNAs (lncRNAs). A major challenge in the years to come is to determine what biological functions, if any, they serve. Although the purpose of these transcripts is largely unknown at present, existing examples suggest that lncRNAs play roles in a wide variety of biological processes. Exemplary cases are lncRNAs within the X-inactivation center. Indeed, lncRNAs dominate control of random X-chromosome inactivation (XCI). The RNA-based regulatory mechanisms of XCI include recruitment of chromatin modifiers, formation of RNA-based subnuclear compartments, and regulation of transcription by antisense transcription. XCI and lncRNAs now also appear to be very relevant in the development and progression of cancer. This perspective focuses on new insights into lncRNA-dependent regulation of XCI, which we believe serve as paradigms for understanding lncRNA function more generally.

Indexed as

Gene Expression Regulation, NeoplasticCell DifferentiationDNA, AntisenseGene SilencingHumansModels, MolecularNeoplasmsPolycomb-Group ProteinsPromoter Regions, GeneticRNA, Long NoncodingTranscriptomeUp-RegulationX Chromosome InactivationDNA, AntisensePolycomb-Group ProteinsRNA, Long NoncodingXIST non-coding RNAactivating RNAactive Xa-RNAinactive XlncRNAlong non-coding RNApolycomb complexespolycomb repressive complex 2PRC2XaX-chromosome inactivationXCIXiXICX-inactivationX-inactivation center

Identifiers

PMID23816838
PMCPMC3771680

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.